RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 BUB3O43684 328 aa16.35■□□□□ 0.21
SNX1-210ENST00000560260 DFFBO76075 338 aa16.35■□□□□ 0.21
SNX1-210ENST00000560260 DEFA6Q01524 100 aa16.35■□□□□ 0.21
SNX1-210ENST00000560260 C16orf54Q6UWD8 224 aa16.35■□□□□ 0.21
SNX1-210ENST00000560260 PATE2Q6UY27 113 aa16.35■□□□□ 0.21
SNX1-210ENST00000560260 TCF24Q7RTU0 167 aa16.35■□□□□ 0.21
SNX1-210ENST00000560260 OR1B1Q8NGR6 318 aa16.35■□□□□ 0.21
SNX1-210ENST00000560260 ARPC5O15511 151 aa16.34■□□□□ 0.21
SNX1-210ENST00000560260 TRAV25A0A0B4J276 109 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 A0A1W2PS18 150 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 K7EIL1 84 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 TSPAN4O14817 238 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 MPDU1O75352 247 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 NUP62P37198 522 aaPredicted RBP16.33■□□□□ 0.2
SNX1-210ENST00000560260 RPL29P47914 159 aaKnown RBP16.33■□□□□ 0.2
SNX1-210ENST00000560260 CD300CQ08708 224 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 RAB31Q13636 194 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 GUCA2BQ16661 112 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 TCTE3Q8IZS6 198 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 INO80EQ8NBZ0 244 aaPredicted RBP16.33■□□□□ 0.2
SNX1-210ENST00000560260 ARL6Q9H0F7 186 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 TMEM231Q9H6L2 316 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 PXMP4Q9Y6I8 212 aa16.33■□□□□ 0.2
SNX1-210ENST00000560260 PRKDCP78527 4128 aaKnown RBP16.33■□□□□ 0.2
SNX1-210ENST00000560260 H3BRN7 92 aa16.32■□□□□ 0.2
SNX1-210ENST00000560260 HYPMO75409 117 aa16.32■□□□□ 0.2
SNX1-210ENST00000560260 BMI1P35226 326 aa16.32■□□□□ 0.2
SNX1-210ENST00000560260 AP2S1P53680 142 aaPredicted RBP16.32■□□□□ 0.2
SNX1-210ENST00000560260 RBPMS2Q6ZRY4 209 aaKnown RBP16.32■□□□□ 0.2
SNX1-210ENST00000560260 NARS2Q96I59 477 aaKnown RBP16.32■□□□□ 0.2
SNX1-210ENST00000560260 UHRF2Q96PU4 802 aa16.32■□□□□ 0.2
SNX1-210ENST00000560260 RSG1Q9BU20 258 aa16.32■□□□□ 0.2
SNX1-210ENST00000560260 SCRT1Q9BWW7 348 aa16.32■□□□□ 0.2
SNX1-210ENST00000560260 ZMAT5Q9UDW3 170 aaKnown RBP16.32■□□□□ 0.2
SNX1-210ENST00000560260 RFNGQ9Y644 331 aa16.32■□□□□ 0.2
SNX1-210ENST00000560260 IGKV3-7A0A075B6H7 116 aa16.31■□□□□ 0.2
SNX1-210ENST00000560260 B2MP61769 119 aa16.31■□□□□ 0.2
SNX1-210ENST00000560260 LAMTOR1Q6IAA8 161 aa16.31■□□□□ 0.2
SNX1-210ENST00000560260 TMEM37Q8WXS4 190 aa16.31■□□□□ 0.2
SNX1-210ENST00000560260 NEURL2Q9BR09 285 aa16.31■□□□□ 0.2
SNX1-210ENST00000560260 PARD6GQ9BYG4 376 aaPredicted RBP16.31■□□□□ 0.2
SNX1-210ENST00000560260 SLC39A9Q9NUM3 307 aa16.31■□□□□ 0.2
SNX1-210ENST00000560260 HIGD1AQ9Y241 93 aa16.31■□□□□ 0.2
SNX1-210ENST00000560260 IFNA5P01569 189 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 CD7P09564 240 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 OR5G3P0C626 314 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 GCSAMLQ5JQS6 135 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 LEMD1Q68G75 181 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 AKAP14Q86UN6 197 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 Q8N1Y9 231 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 PPP1R14BQ96C90 147 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 GRAMD2BQ96HH9 432 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 SPAG8Q99932 426 aaPredicted RBP16.3■□□□□ 0.2
SNX1-210ENST00000560260 SHANK2-AS3Q9BTD1 123 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 SLC25A39Q9BZJ4 359 aaPredicted RBP16.3■□□□□ 0.2
SNX1-210ENST00000560260 MFFQ9GZY8 342 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 ARV1Q9H2C2 271 aa16.3■□□□□ 0.2
SNX1-210ENST00000560260 ZNF98A6NK75 572 aa16.29■□□□□ 0.2
SNX1-210ENST00000560260 PXDC1Q5TGL8 231 aa16.29■□□□□ 0.2
SNX1-210ENST00000560260 MORN5Q5VZ52 161 aa16.29■□□□□ 0.2
SNX1-210ENST00000560260 GBGT1Q8N5D6 347 aa16.29■□□□□ 0.2
SNX1-210ENST00000560260 SLC25A32Q9H2D1 315 aa16.29■□□□□ 0.2
SNX1-210ENST00000560260 HMSDA8MTL9 139 aa16.28■□□□□ 0.2
SNX1-210ENST00000560260 COX7A2P2O60397 106 aa16.28■□□□□ 0.2
SNX1-210ENST00000560260 CXCL2P19875 107 aa16.28■□□□□ 0.2
SNX1-210ENST00000560260 TFPI2P48307 235 aa16.28■□□□□ 0.2
SNX1-210ENST00000560260 MS4A6AQ9H2W1 248 aa16.28■□□□□ 0.2
SNX1-210ENST00000560260 SLC25A22Q9H936 323 aa16.28■□□□□ 0.2
SNX1-210ENST00000560260 C1orf194Q5T5A4 169 aa16.27■□□□□ 0.2
SNX1-210ENST00000560260 RPL7L1Q6DKI1 246 aaKnown RBP16.27■□□□□ 0.2
SNX1-210ENST00000560260 SIGLEC15Q6ZMC9 328 aa16.27■□□□□ 0.2
SNX1-210ENST00000560260 SCGB1C1Q8TD33 95 aa16.27■□□□□ 0.2
SNX1-210ENST00000560260 WFDC10AQ9H1F0 79 aa16.27■□□□□ 0.2
SNX1-210ENST00000560260 CYTL1Q9NRR1 136 aa16.27■□□□□ 0.2
SNX1-210ENST00000560260 C19orf73Q9NVV2 129 aa16.27■□□□□ 0.2
SNX1-210ENST00000560260 CD81P60033 236 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 RPL11P62913 178 aaKnown RBP16.26■□□□□ 0.19
SNX1-210ENST00000560260 ZNF266Q14584 549 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 ZNF345Q14585 488 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 Q6ZRG5 221 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 KCNRGQ8N5I3 272 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 FAM24BQ8N5W8 94 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 STXBP6Q8NFX7 210 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 C17orf77Q96MU5 243 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 SMAD5-AS1Q9Y6J3 95 aa16.26■□□□□ 0.19
SNX1-210ENST00000560260 HELTA6NFD8 242 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 CD5P06127 495 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 ODF3L2Q3SX64 289 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 C10orf113Q5VZT2 155 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 LINC00305Q7Z4B0 112 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 WFDC3Q8IUB2 231 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 ZNF709Q8N972 641 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 HSD17B11Q8NBQ5 300 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 PFDN2Q9UHV9 154 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 DNAH9Q9NYC9 4486 aa16.25■□□□□ 0.19
SNX1-210ENST00000560260 ELOA3CA0A087WX78 387 aaPredicted RBP16.24■□□□□ 0.19
SNX1-210ENST00000560260 OR4C46A6NHA9 309 aa16.24■□□□□ 0.19
SNX1-210ENST00000560260 C17orf112F2Z3M2 114 aa16.24■□□□□ 0.19
SNX1-210ENST00000560260 C1QBP02746 253 aa16.24■□□□□ 0.19
SNX1-210ENST00000560260 OR8I2Q8N0Y5 310 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms