RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 TMEM147Q9BVK8 224 aa9.11□□□□□ -0.95
SNX1-209ENST00000559961 STRAPQ9Y3F4 350 aaKnown RBP9.11□□□□□ -0.95
SNX1-209ENST00000559961 X6R8D5 127 aa9.11□□□□□ -0.95
SNX1-209ENST00000559961 PLECQ15149 4684 aaKnown RBP9.11□□□□□ -0.95
SNX1-209ENST00000559961 EPPK1P58107 5090 aaKnown RBP9.1□□□□□ -0.95
SNX1-209ENST00000559961 ALMS1Q8TCU4 4167 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 IGHV4-4A0A075B6R2 117 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 CENPXA8MT69 81 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 ISLRO14498 428 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 HOXB5P09067 269 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 P0DMU3 169 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 FAM231AP0DMU4 169 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 FAM231CP0DMU5 169 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 EMP1P54849 157 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 UBE2MP61081 183 aaKnown RBP9.1□□□□□ -0.95
SNX1-209ENST00000559961 PSG9Q00887 426 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 SPANXN5Q5MJ07 72 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 TRIQKQ629K1 86 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 LRTM2Q8N967 370 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 CSNK1G2-AS1Q8NCQ2 148 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 TMEM208Q9BTX3 173 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 MAGT1Q9H0U3 335 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 SAV1Q9H4B6 383 aaPredicted RBP9.1□□□□□ -0.95
SNX1-209ENST00000559961 SLC25A22Q9H936 323 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 APLNQ9ULZ1 77 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 SLC45A2Q9UMX9 530 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 RNF24Q9Y225 148 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 RFNGQ9Y644 331 aa9.1□□□□□ -0.95
SNX1-209ENST00000559961 HYDINQ4G0P3 5121 aa9.09□□□□□ -0.95
SNX1-209ENST00000559961 ELOA3CA0A087WX78 387 aaPredicted RBP9.09□□□□□ -0.95
SNX1-209ENST00000559961 SMCO3A2RU48 225 aa9.09□□□□□ -0.95
SNX1-209ENST00000559961 NAP1L6A6NFF2 107 aa9.09□□□□□ -0.95
SNX1-209ENST00000559961 ORM2P19652 201 aa9.09□□□□□ -0.95
SNX1-209ENST00000559961 OR1B1Q8NGR6 318 aa9.09□□□□□ -0.95
SNX1-209ENST00000559961 NEU1Q99519 415 aa9.09□□□□□ -0.95
SNX1-209ENST00000559961 PITX3O75364 302 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 HBE1P02100 147 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 FXYD7P58549 80 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 RAP2BP61225 183 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 PPP1R1AQ13522 171 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 THAP8Q8NA92 274 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 LRRC20Q8TCA0 184 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 CLUHP3Q96NS8 147 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 RSG1Q9BU20 258 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 PPP1R14DQ9NXH3 145 aa9.08□□□□□ -0.96
SNX1-209ENST00000559961 IGKV1D-37A0A075B6S9 117 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 DUSP14O95147 198 aaKnown RBP9.07□□□□□ -0.96
SNX1-209ENST00000559961 AMBPP02760 352 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 IL5P05113 134 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 FGL1Q08830 312 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 C12orf74Q32Q52 190 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 FAM78BQ5VT40 261 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 ZNF767PQ75MW2 155 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 UBE2DNLQ8IWF7 75 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 OR4D5Q8NGN0 318 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 WDR12Q9GZL7 423 aaKnown RBP9.07□□□□□ -0.96
SNX1-209ENST00000559961 PSENENQ9NZ42 101 aa9.07□□□□□ -0.96
SNX1-209ENST00000559961 ZNF98A6NK75 572 aa9.06□□□□□ -0.96
SNX1-209ENST00000559961 RRN3P1Q2M238 152 aa9.06□□□□□ -0.96
SNX1-209ENST00000559961 CNPY1Q3B7I2 92 aa9.06□□□□□ -0.96
SNX1-209ENST00000559961 C4orf46Q504U0 113 aa9.06□□□□□ -0.96
SNX1-209ENST00000559961 TRIM63Q969Q1 353 aa9.06□□□□□ -0.96
SNX1-209ENST00000559961 FAM210BQ96KR6 192 aa9.06□□□□□ -0.96
SNX1-209ENST00000559961 DOK5Q9P104 306 aa9.06□□□□□ -0.96
SNX1-209ENST00000559961 V9GYH0 126 aa9.06□□□□□ -0.96
SNX1-209ENST00000559961 H3BP45 60 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 HYPMO75409 117 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 RPL7P18124 248 aaKnown RBP9.05□□□□□ -0.96
SNX1-209ENST00000559961 PAX9P55771 341 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 B2MP61769 119 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 SELENOTP62341 195 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 GDF5OSQ5U4N7 250 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 ZNF705AQ6ZN79 300 aaPredicted RBP9.05□□□□□ -0.96
SNX1-209ENST00000559961 POM121L12Q8N7R1 296 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 NIPSNAP3BQ9BS92 247 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 MGAT4CQ9UBM8 478 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 CELA1Q9UNI1 258 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 HIGD1AQ9Y241 93 aa9.05□□□□□ -0.96
SNX1-209ENST00000559961 A0A0J9YX75 114 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 C9orf170A2RU37 121 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 ZNF705FA8MVS1 300 aaPredicted RBP9.04□□□□□ -0.96
SNX1-209ENST00000559961 OR5G3P0C626 314 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 ZNF705DP0CH99 300 aaPredicted RBP9.04□□□□□ -0.96
SNX1-209ENST00000559961 ZNF705BP0CI00 300 aaPredicted RBP9.04□□□□□ -0.96
SNX1-209ENST00000559961 HTN3P15516 51 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 PRR20EP86478 221 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 PRR20CP86479 221 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 PRR20DP86480 221 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 PRR20BP86481 221 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 PRR20AP86496 221 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 ZNF79Q15937 498 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 CYP2G1PQ6ZSU1 146 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 LINC00336Q6ZUF6 198 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 ACOT7LQ6ZUV0 252 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 TMEM144Q7Z5S9 345 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 CCDC190Q86UF4 302 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 OR10P1Q8NGE3 313 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 SLC35B3Q9H1N7 401 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 SLC25A32Q9H2D1 315 aa9.04□□□□□ -0.96
SNX1-209ENST00000559961 LOC102723971A0A1B0GUV8 181 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms