RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ATP6V0E1O15342 81 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 SUMO1P63165 101 aaKnown RBP13.23□□□□□ -0.29
LDLR-206ENST00000557958 ECSCRQ19T08 205 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 ZNF343Q6P1L6 599 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 VN1R17PQ8TDU5 208 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 SSX3Q99909 188 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 PITPNC1Q9UKF7 332 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 URGCP-MRPS24S4R325 110 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 M0QZK8 103 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 PYYP10082 97 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 DNLZQ5SXM8 178 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 TMEM190Q8WZ59 177 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 FXYD5Q96DB9 178 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 FBXL7Q9UJT9 491 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 RNF24Q9Y225 148 aa13.23□□□□□ -0.29
LDLR-206ENST00000557958 IFITM10A6NMD0 228 aa13.22□□□□□ -0.29
LDLR-206ENST00000557958 GGTLC3B5MD39 225 aa13.22□□□□□ -0.29
LDLR-206ENST00000557958 S100A2P29034 98 aa13.22□□□□□ -0.29
LDLR-206ENST00000557958 S100A7P31151 101 aa13.22□□□□□ -0.29
LDLR-206ENST00000557958 FCGR2BP31994 310 aaPredicted RBP13.22□□□□□ -0.29
LDLR-206ENST00000557958 GAR1Q9NY12 217 aaKnown RBP13.22□□□□□ -0.29
LDLR-206ENST00000557958 PDZD2O15018 2839 aa13.22□□□□□ -0.29
LDLR-206ENST00000557958 CR1P17927 2039 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 TGIF2-C20orf24A0A0A6YYL0 155 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 MDFIC2A0A1B0GVS7 189 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HELTA6NFD8 242 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BKO60814 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 OR2J3O76001 311 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BJP06899 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BOP23527 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 CRYBB3P26998 211 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BBP33778 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BDP58876 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BCP62807 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST2H2BEQ16778 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 KLK9Q2XQG4 91 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BHQ93079 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 RNF125Q96EQ8 232 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BNQ99877 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 HIST1H2BMQ99879 126 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 SLC25A39Q9BZJ4 359 aaPredicted RBP13.21□□□□□ -0.29
LDLR-206ENST00000557958 MRPL27Q9P0M9 148 aaKnown RBP13.21□□□□□ -0.29
LDLR-206ENST00000557958 KLK9Q9UKQ9 250 aa13.21□□□□□ -0.29
LDLR-206ENST00000557958 TRBV24-1A0A075B6N3 115 aa13.21□□□□□ -0.3
LDLR-206ENST00000557958 GNG4P50150 75 aa13.21□□□□□ -0.3
LDLR-206ENST00000557958 TMEM219Q86XT9 240 aa13.21□□□□□ -0.3
LDLR-206ENST00000557958 TMEM14CQ9P0S9 112 aa13.21□□□□□ -0.3
LDLR-206ENST00000557958 UNC79Q9P2D8 2635 aa13.2□□□□□ -0.3
LDLR-206ENST00000557958 NDUFB8O95169 186 aa13.2□□□□□ -0.3
LDLR-206ENST00000557958 IL4P05112 153 aa13.2□□□□□ -0.3
LDLR-206ENST00000557958 NBEAP1P0C6P0 100 aa13.2□□□□□ -0.3
LDLR-206ENST00000557958 NDUFA6P56556 154 aa13.2□□□□□ -0.3
LDLR-206ENST00000557958 KCNIP4Q6PIL6 250 aa13.2□□□□□ -0.3
LDLR-206ENST00000557958 PIFOQ8TCI5 191 aa13.2□□□□□ -0.3
LDLR-206ENST00000557958 FAM210BQ96KR6 192 aa13.2□□□□□ -0.3
LDLR-206ENST00000557958 TRBV20OR9-2A0A075B6H5 130 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 GP9P14770 177 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 GALR1P47211 349 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 FAM209BQ5JX69 171 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 NECAP1Q8NC96 275 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 SFRP2Q96HF1 295 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 BTF3L4Q96K17 158 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 SHANK2-AS3Q9BTD1 123 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 ZMAT5Q9UDW3 170 aaKnown RBP13.19□□□□□ -0.3
LDLR-206ENST00000557958 CELSR1Q9NYQ6 3014 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 WI2-2373I1.2A0A1W2PRP0 233 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 H3BUX3 64 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 SRP14P37108 136 aaKnown RBP13.19□□□□□ -0.3
LDLR-206ENST00000557958 CNN1P51911 297 aaKnown RBP13.19□□□□□ -0.3
LDLR-206ENST00000557958 CRIP2P52943 208 aaPredicted RBP13.19□□□□□ -0.3
LDLR-206ENST00000557958 BPIFA4PQ86YQ2 179 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 ZNF491Q8N8L2 437 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 ELOVL1Q9BW60 279 aa13.19□□□□□ -0.3
LDLR-206ENST00000557958 ITPR2Q14571 2701 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 TAS2R60P59551 318 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 RHOGP84095 191 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 C15orf32Q32M92 178 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 PYY3Q5JQD4 70 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 ZNF329Q86UD4 541 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 HIST3H2BBQ8N257 126 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 BLNKQ8WV28 456 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 S4R3C0 116 aa13.18□□□□□ -0.3
LDLR-206ENST00000557958 TRBV9A0A0B4J1U6 114 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 A6NDX4 124 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 H3BRN7 92 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 GATCO43716 136 aaKnown RBP13.17□□□□□ -0.3
LDLR-206ENST00000557958 TRGC2P03986 189 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 HIST1H1EP10412 219 aaKnown RBP13.17□□□□□ -0.3
LDLR-206ENST00000557958 CENPWQ5EE01 88 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 ZNF600Q6ZNG1 722 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 BCL6BQ8N143 479 aaPredicted RBP13.17□□□□□ -0.3
LDLR-206ENST00000557958 OR4F17Q8NGA8 305 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 OCC1Q8TAD7 63 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 IMMP2LQ96T52 175 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 CDC42EP3Q9UKI2 254 aa13.17□□□□□ -0.3
LDLR-206ENST00000557958 TRAV41A0A0B4J266 112 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 OR2T8A6NH00 312 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 PEX7O00628 323 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 PHOX2AO14813 284 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms