RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 Q5BKY6 102 aa10.72□□□□□ -0.69
USP3-205ENST00000557884 ZNF546Q86UE3 836 aa10.72□□□□□ -0.69
USP3-205ENST00000557884 STXBP6Q8NFX7 210 aa10.72□□□□□ -0.69
USP3-205ENST00000557884 THAP6Q8TBB0 222 aa10.72□□□□□ -0.69
USP3-205ENST00000557884 GLMPQ8WWB7 406 aa10.72□□□□□ -0.69
USP3-205ENST00000557884 MS4A6AQ9H2W1 248 aa10.72□□□□□ -0.69
USP3-205ENST00000557884 SLC45A2Q9UMX9 530 aa10.72□□□□□ -0.69
USP3-205ENST00000557884 DNASE2O00115 360 aaPredicted RBP10.71□□□□□ -0.69
USP3-205ENST00000557884 BUB3O43684 328 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 CD5P06127 495 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 FGF7P21781 194 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 RPL12P30050 165 aaKnown RBP10.71□□□□□ -0.69
USP3-205ENST00000557884 CAMLGP49069 296 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 SELENOTP62341 195 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 PAFAH1B2P68402 229 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 ATP6V1FQ16864 119 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 ASCL2Q99929 193 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 SMIM3Q9BZL3 60 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 ARL6Q9H0F7 186 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 TUBA4BQ9H853 241 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 PFDN2Q9UHV9 154 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 WDR83OSQ9Y284 106 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 HSPB11Q9Y547 144 aa10.71□□□□□ -0.69
USP3-205ENST00000557884 HELTA6NFD8 242 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 HYPMO75409 117 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 OR5G3P0C626 314 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 FRMD6-AS1P0C7T7 363 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 LYL1P12980 280 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 NUP62P37198 522 aaPredicted RBP10.7□□□□□ -0.7
USP3-205ENST00000557884 RAP2BP61225 183 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 RAB31Q13636 194 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 MIC13Q5XKP0 118 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 GGTLC1Q9BX51 225 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 SLC25A22Q9H936 323 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 C19orf73Q9NVV2 129 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 HIGD1AQ9Y241 93 aa10.7□□□□□ -0.7
USP3-205ENST00000557884 ODF3L2Q3SX64 289 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 LEMD1Q68G75 181 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 SIGLEC15Q6ZMC9 328 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 FAM24BQ8N5W8 94 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 OR2T35Q8NGX2 323 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 CHAC2Q8WUX2 184 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 ASB13Q8WXK3 278 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 SCRT1Q9BWW7 348 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 SRD5A3Q9H8P0 318 aa10.69□□□□□ -0.7
USP3-205ENST00000557884 HUWE1Q7Z6Z7 4374 aaKnown RBP10.68□□□□□ -0.7
USP3-205ENST00000557884 FXYD6-FXYD2A0A087WZ82 144 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 ZNF98A6NK75 572 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 COX7A2P2O60397 106 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 FGL1Q08830 312 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 OPCMLQ14982 345 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 PATE2Q6UY27 113 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 OR8I2Q8N0Y5 310 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 UHRF2Q96PU4 802 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 ATP5SQ99766 215 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 B9D2Q9BPU9 175 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 SLC25A39Q9BZJ4 359 aaPredicted RBP10.68□□□□□ -0.7
USP3-205ENST00000557884 SLC25A32Q9H2D1 315 aa10.68□□□□□ -0.7
USP3-205ENST00000557884 SMLR1H3BR10 107 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 H3BRN7 92 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 PLP1P60201 277 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 ZNF124Q15973 351 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 C1orf194Q5T5A4 169 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 APRG1Q8IVJ8 170 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 SHANK2-AS3Q9BTD1 123 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 NPCDR1Q9BY65 106 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 ARV1Q9H2C2 271 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 WFDC1Q9HC57 220 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 PXMP4Q9Y6I8 212 aa10.67□□□□□ -0.7
USP3-205ENST00000557884 TRAV2A0A0B4J234 112 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 RBMY1BA6NDE4 496 aaKnown RBP10.66□□□□□ -0.7
USP3-205ENST00000557884 RBMY1EA6NEQ0 496 aaKnown RBP10.66□□□□□ -0.7
USP3-205ENST00000557884 K7EQG2 157 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 RBMY1DP0C7P1 496 aaKnown RBP10.66□□□□□ -0.7
USP3-205ENST00000557884 ZNF688P0C7X2 276 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 AP2S1P53680 142 aaPredicted RBP10.66□□□□□ -0.7
USP3-205ENST00000557884 B2MP61769 119 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 PRR20EP86478 221 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 PRR20CP86479 221 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 PRR20DP86480 221 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 PRR20BP86481 221 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 PRR20AP86496 221 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 DCANP1Q8TF63 244 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 CITED4Q96RK1 184 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 WDR61Q9GZS3 305 aaKnown RBP10.66□□□□□ -0.7
USP3-205ENST00000557884 MAP6D1Q9H9H5 199 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 NRN1Q9NPD7 142 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 SLC39A9Q9NUM3 307 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 FBXL17Q9UF56 701 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 COL7A1Q02388 2944 aa10.66□□□□□ -0.7
USP3-205ENST00000557884 A8MZ25 164 aa10.65□□□□□ -0.7
USP3-205ENST00000557884 G3V3Q6 166 aa10.65□□□□□ -0.7
USP3-205ENST00000557884 MPDU1O75352 247 aa10.65□□□□□ -0.7
USP3-205ENST00000557884 S100A7P31151 101 aa10.65□□□□□ -0.7
USP3-205ENST00000557884 RPL29P47914 159 aaKnown RBP10.65□□□□□ -0.7
USP3-205ENST00000557884 DEFB131AP59861 70 aa10.65□□□□□ -0.7
USP3-205ENST00000557884 PXDC1Q5TGL8 231 aa10.65□□□□□ -0.7
USP3-205ENST00000557884 Q6ZRG5 221 aa10.65□□□□□ -0.7
USP3-205ENST00000557884 SBSPONQ8IVN8 264 aa10.65□□□□□ -0.7
USP3-205ENST00000557884 TMEM37Q8WXS4 190 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms