RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PRSS12P56730 875 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 KLF17Q5JT82 389 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-226ENST00000556825 PRSS22Q9GZN4 317 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 AMMECR1Q9Y4X0 333 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-226ENST00000556825 UNC80Q8N2C7 3258 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 BAALCQ8WXS3 180 aa11.11□□□□□ -0.63
SHMT2-226ENST00000556825 HS3ST6Q96QI5 342 aa11.11□□□□□ -0.63
SHMT2-226ENST00000556825 HHLA3Q9XRX5 114 aa11.11□□□□□ -0.63
SHMT2-226ENST00000556825 DUSP14O95147 198 aaKnown RBP11.11□□□□□ -0.63
SHMT2-226ENST00000556825 LOXL1Q08397 574 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-226ENST00000556825 OR1C1Q15619 314 aa11.11□□□□□ -0.63
SHMT2-226ENST00000556825 HIST1H4GQ99525 98 aa11.11□□□□□ -0.63
SHMT2-226ENST00000556825 ZMAT4Q9H898 229 aa11.11□□□□□ -0.63
SHMT2-226ENST00000556825 TRAV8-2A0A0B4J237 113 aa11.1□□□□□ -0.63
SHMT2-226ENST00000556825 IFI27P40305 119 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-226ENST00000556825 MRPL23Q16540 153 aaKnown RBP11.1□□□□□ -0.63
SHMT2-226ENST00000556825 KRTAP27-1Q3LI81 207 aa11.1□□□□□ -0.63
SHMT2-226ENST00000556825 KIR2DL5BQ8NHK3 375 aa11.1□□□□□ -0.63
SHMT2-226ENST00000556825 PROCRQ9UNN8 238 aa11.1□□□□□ -0.63
SHMT2-226ENST00000556825 EXPH5Q8NEV8 1989 aa11.1□□□□□ -0.63
SHMT2-226ENST00000556825 HCFC1P51610 2035 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 NDUFA7O95182 113 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 HBDP02042 147 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 EMP1P54849 157 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 TMEM196Q5HYL7 178 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 RPP25Q9BUL9 199 aaKnown RBP11.09□□□□□ -0.63
SHMT2-226ENST00000556825 PRRG4Q9BZD6 226 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 FZR1Q9UM11 496 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 TRBV7-3A0A075B6L6 115 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 H3BML4 177 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 PEX7O00628 323 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 ORM2P19652 201 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 CRYGSP22914 178 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 PPP1CAP62136 330 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 HES1Q14469 280 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 C2orf27AQ580R0 203 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 LYRM7Q5U5X0 104 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 SLC22A18ASQ8N1D0 253 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 NABP2Q9BQ15 211 aa11.09□□□□□ -0.63
SHMT2-226ENST00000556825 REV3LO60673 3130 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 A0A1W2PP55 124 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 WI2-2373I1.2A0A1W2PRP0 233 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 UBE2D3P61077 147 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 UBE2D2P62837 147 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 SLC25A53Q5H9E4 307 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 WDR31Q8NA23 367 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 CHCHD5Q9BSY4 110 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 SPANXCQ9NY87 97 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 CACNA1IQ9P0X4 2223 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 TMSB15BA0A087X1C1 80 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 SRRM4A7MD48 611 aaKnown RBP11.08□□□□□ -0.64
SHMT2-226ENST00000556825 LINC01619G3V211 115 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 SCGB1C2P0DMR2 95 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 TNFRSF4P43489 277 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 ZFP2Q6ZN57 461 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 C15orf53Q8NAA6 179 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 NABP1Q96AH0 204 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 OR2H1Q9GZK4 316 aa11.08□□□□□ -0.64
SHMT2-226ENST00000556825 MYMXA0A1B0GTQ4 84 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 C17orf98A8MV24 154 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 P01737 135 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 CA6P23280 308 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 FCER1GP30273 86 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 BRWD1-AS2P59051 145 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 GATD1Q8NB37 220 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 FGFBP3Q8TAT2 258 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 ZNF492Q9P255 531 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 RAXQ9Y2V3 346 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 PCSK5Q92824 1860 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 RANBP2P49792 3224 aaKnown RBP11.07□□□□□ -0.64
SHMT2-226ENST00000556825 IGLC6P0CF74 106 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 GATA4P43694 442 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 HERVK_113P63121 156 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 TNFAIP6P98066 277 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-226ENST00000556825 EIF4EBP1Q13541 118 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-226ENST00000556825 ZNF329Q86UD4 541 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 ZNF488Q96MN9 340 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 ODF3Q96PU9 254 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 SLC25A2Q9BXI2 301 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 EDA2RQ9HAV5 297 aa11.07□□□□□ -0.64
SHMT2-226ENST00000556825 KLF13Q9Y2Y9 288 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-226ENST00000556825 XIRP2A4UGR9 3374 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 LOC107984156A0A0G2JMH3 177 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 C19orf71A6NCJ1 209 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 C8orf88P0DMB2 117 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 HHEXQ03014 270 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 C10orf128Q5T292 105 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 TMEM219Q86XT9 240 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 ARL17AQ8IVW1 177 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 MAPKAPK5-AS1Q8N8E1 139 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 RFESDQ8TAC1 157 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 F5P12259 2224 aa11.06□□□□□ -0.64
SHMT2-226ENST00000556825 M0R2P5 195 aa11.05□□□□□ -0.64
SHMT2-226ENST00000556825 GFRA3O60609 400 aa11.05□□□□□ -0.64
SHMT2-226ENST00000556825 IGKV3-11P04433 115 aa11.05□□□□□ -0.64
SHMT2-226ENST00000556825 PAX8Q06710 450 aa11.05□□□□□ -0.64
SHMT2-226ENST00000556825 LINC00322Q6ZN03 302 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-226ENST00000556825 LINC00596Q86U02 117 aa11.05□□□□□ -0.64
SHMT2-226ENST00000556825 GTSCR1Q86UQ5 136 aa11.05□□□□□ -0.64
SHMT2-226ENST00000556825 ZNRF2Q8NHG8 242 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms