RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TRBV6-4A0A1B0GX49 114 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 B4DSR2 109 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 TAX1BP3O14907 124 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 IFNA7P01567 189 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 COL1A1P02452 1464 aaPredicted RBP0.51□□□□□ -2.33
SCFD1-218ENST00000556256 SPRNQ5BIV9 151 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 S100A7AQ86SG5 101 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 DOCK3Q8IZD9 2030 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 OR10K1Q8NGX5 313 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 CANT1Q8WVQ1 401 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 OPTCQ9UBM4 332 aa0.51□□□□□ -2.33
SCFD1-218ENST00000556256 EML6Q6ZMW3 1958 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 SCN10AQ9Y5Y9 1956 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 DENND4CQ5VZ89 1909 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 TCRBV4S1A1TA0A5B7 111 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 NDUFB3O43676 98 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 DHRS4L2Q6PKH6 230 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 ZNF833PQ6ZTB9 187 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 EXOC3-AS1Q8N2X6 119 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 OR2T35Q8NGX2 323 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 TMEM254Q8TBM7 123 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 CHMP6Q96FZ7 201 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 TEX37Q96LM6 180 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 AMELYQ99218 206 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 SLC25A21Q9BQT8 299 aaPredicted RBP0.5□□□□□ -2.33
SCFD1-218ENST00000556256 ARL5AQ9Y689 179 aa0.5□□□□□ -2.33
SCFD1-218ENST00000556256 TNS3Q68CZ2 1445 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 MCM3APO60318 1980 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 CEP192Q8TEP8 1941 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.49□□□□□ -2.33
SCFD1-218ENST00000556256 A0A087WSZ3 146 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 IGHV1-58A0A0C4DH39 117 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 E7EUB6 86 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 HMGB3O15347 200 aaKnown RBP0.49□□□□□ -2.33
SCFD1-218ENST00000556256 NUPR1O60356 82 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 DSCR4P56555 118 aaPredicted RBP0.49□□□□□ -2.33
SCFD1-218ENST00000556256 ARF6P62330 175 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 MRPS25P82663 173 aaKnown RBP0.49□□□□□ -2.33
SCFD1-218ENST00000556256 TAF1AQ15573 450 aaPredicted RBP0.49□□□□□ -2.33
SCFD1-218ENST00000556256 BCL2L15Q5TBC7 163 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 GRINAQ7Z429 371 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 Q8N6K4 173 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 TAF1LQ8IZX4 1826 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 CAMSAP1Q5T5Y3 1602 aa0.49□□□□□ -2.33
SCFD1-218ENST00000556256 KIF1BO60333 1816 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 MUC5ACP98088 5654 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 TMEM256-PLSCR3K7ERE1 68 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 GGCTO75223 188 aaKnown RBP0.48□□□□□ -2.33
SCFD1-218ENST00000556256 ATP5HO75947 161 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 IGLV1-51P01701 117 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 HLA-EP13747 358 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 DYNLT3P51808 116 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 NCALDP61601 193 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 UBE2BP63146 152 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 MRPS15P82914 257 aaKnown RBP0.48□□□□□ -2.33
SCFD1-218ENST00000556256 PSG9Q00887 426 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 TMED2Q15363 201 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 FAM74A1Q5RGS3 127 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 PATE2Q6UY27 113 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 LINC00322Q6ZN03 302 aaPredicted RBP0.48□□□□□ -2.33
SCFD1-218ENST00000556256 ST6GALNAC3Q8NDV1 305 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 PXT1Q8NFP0 134 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 BORCS5Q969J3 196 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 LINC00052Q96N35 136 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 TP53RKQ96S44 253 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 TMEM70Q9BUB7 260 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 PRNDQ9UKY0 176 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 LY96Q9Y6Y9 160 aa0.48□□□□□ -2.33
SCFD1-218ENST00000556256 TNRC6AQ8NDV7 1962 aaKnown RBP0.48□□□□□ -2.33
SCFD1-218ENST00000556256 MIA2Q96PC5 1412 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 LAMB4A4D0S4 1761 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 RFX7Q2KHR2 1363 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 TRAV10A0A0B4J240 114 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 C4orf22Q6V702 233 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 KRTAP19-3Q7Z4W3 81 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 LYSMD1Q96S90 227 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 PHB2Q99623 299 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 CCDC94Q9BW85 323 aaPredicted RBP0.47□□□□□ -2.33
SCFD1-218ENST00000556256 NPCDR1Q9BY65 106 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 TAS2R7Q9NYW3 318 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 ORMDL1Q9P0S3 153 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 PCTPQ9UKL6 214 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 PYCARDQ9ULZ3 195 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 OBSL1O75147 1896 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 ARHGEF11O15085 1522 aa0.47□□□□□ -2.33
SCFD1-218ENST00000556256 KDM6AO15550 1401 aaPredicted RBP0.47□□□□□ -2.33
SCFD1-218ENST00000556256 TLCD2A6NGC4 264 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 CRHP06850 196 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 EFNA4P52798 201 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 MYL5Q02045 173 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 C1orf134Q5TEV5 83 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 EIF5AL1Q6IS14 154 aaKnown RBP0.46□□□□□ -2.34
SCFD1-218ENST00000556256 C2orf82Q6UX34 121 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 Q8TAT8 98 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 MED29Q9NX70 200 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 KIAA1549Q9HCM3 1950 aa0.46□□□□□ -2.34
SCFD1-218ENST00000556256 LAMA4Q16363 1823 aa0.45□□□□□ -2.34
SCFD1-218ENST00000556256 SCN3AQ9NY46 2000 aa0.45□□□□□ -2.34
SCFD1-218ENST00000556256 DUXBA0A1W2PPF3 345 aa0.45□□□□□ -2.34
SCFD1-218ENST00000556256 NCR3O14931 201 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms