RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 MLXQ9UH92 298 aa10.74□□□□□ -0.69
SHMT2-217ENST00000555116 RFNGQ9Y644 331 aa10.74□□□□□ -0.69
SHMT2-217ENST00000555116 IGHV3OR16-8A0A075B7F1 116 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 K7EMT4 169 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 DFFBO76075 338 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 CAMLGP49069 296 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 RND2P52198 227 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 CD69Q07108 199 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 LCN12Q6JVE5 192 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 TMEM116Q8NCL8 245 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 OR2G3Q8NGZ4 309 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 GNPNAT1Q96EK6 184 aaPredicted RBP10.73□□□□□ -0.69
SHMT2-217ENST00000555116 C20orf24Q9BUV8 137 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 TMEM231Q9H6L2 316 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 TREM1Q9NP99 234 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 DAZ1Q9NQZ3 744 aaKnown RBP10.73□□□□□ -0.69
SHMT2-217ENST00000555116 MRPL27Q9P0M9 148 aaKnown RBP10.73□□□□□ -0.69
SHMT2-217ENST00000555116 TGP01266 2768 aa10.73□□□□□ -0.69
SHMT2-217ENST00000555116 AGPAT2O15120 278 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 ZNF207O43670 478 aaKnown RBP10.72□□□□□ -0.69
SHMT2-217ENST00000555116 IGKV1-17P01599 117 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 IFNA4P05014 189 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 METTL15P1P0C7V9 234 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 ADCYAP1P18509 176 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 ARL16Q0P5N6 197 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 DEFB121Q5J5C9 76 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 C10orf91Q5T1B1 145 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 ETFRF1Q6IPR1 90 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 SLC16A13Q7RTY0 426 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 CLRN3Q8NCR9 226 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 UQCC1Q9NVA1 299 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 SELENOKQ9Y6D0 94 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 ZNF785A8K8V0 405 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 UMAD1C9J7I0 102 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 CD5P06127 495 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 IGLC1P0CG04 106 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 FLI1Q01543 452 aaPredicted RBP10.72□□□□□ -0.69
SHMT2-217ENST00000555116 SPANXN5Q5MJ07 72 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 ATRAIDQ6UW56 229 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 TOMM20LQ6UXN7 152 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 ZNF600Q6ZNG1 722 aa10.72□□□□□ -0.69
SHMT2-217ENST00000555116 TRAV30A0A087WSZ9 112 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 IFNA5P01569 189 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 GPX4P36969 197 aaPredicted RBP10.71□□□□□ -0.69
SHMT2-217ENST00000555116 RAB11AP62491 216 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 HBG1P69891 147 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 HBG2P69892 147 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 TIGITQ495A1 244 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 TMEM14EPQ6UXP3 125 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 Q8N1Y9 231 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 FAM213BQ8TBF2 198 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 NPIPB3Q92617 1050 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 NKX6-2Q9C056 277 aaPredicted RBP10.71□□□□□ -0.69
SHMT2-217ENST00000555116 ZFAND3Q9H8U3 227 aa10.71□□□□□ -0.69
SHMT2-217ENST00000555116 PUS1Q9Y606 427 aaKnown RBP eCLIP10.71□□□□□ -0.69
SHMT2-217ENST00000555116 PRSS46E5RG02 174 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 DNASE2O00115 360 aaPredicted RBP10.7□□□□□ -0.7
SHMT2-217ENST00000555116 YIF1AO95070 293 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 TMEM61Q8N0U2 210 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 CARHSP1Q9Y2V2 147 aaKnown RBP10.7□□□□□ -0.7
SHMT2-217ENST00000555116 F8W036 122 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 OR10J1P30954 320 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 RPP30P78346 268 aaKnown RBP10.7□□□□□ -0.7
SHMT2-217ENST00000555116 ACY3Q96HD9 319 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 SCRT1Q9BWW7 348 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 SEC11CQ9BY50 192 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 SMPXQ9UHP9 88 aa10.7□□□□□ -0.7
SHMT2-217ENST00000555116 IGHV7-4-1A0A0J9YVY3 117 aa10.69□□□□□ -0.7
SHMT2-217ENST00000555116 C9JQL5 133 aa10.69□□□□□ -0.7
SHMT2-217ENST00000555116 SCGB2A1O75556 95 aa10.69□□□□□ -0.7
SHMT2-217ENST00000555116 GAMTQ14353 236 aa10.69□□□□□ -0.7
SHMT2-217ENST00000555116 GUCA2BQ16661 112 aa10.69□□□□□ -0.7
SHMT2-217ENST00000555116 TRAV25A0A0B4J276 109 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 YPEL3P61236 119 aaPredicted RBP10.68□□□□□ -0.7
SHMT2-217ENST00000555116 SVBPQ8N300 66 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 LILRB2Q8N423 598 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 SLC35E1Q96K37 410 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 SMAD5-AS1Q9Y6J3 95 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 IGHV3-49A0A0A0MS15 119 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 CHEK1O14757 476 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 SCAF4O95104 1147 aaKnown RBP10.68□□□□□ -0.7
SHMT2-217ENST00000555116 SFTA3P0C7M3 94 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 SLC38A11Q08AI6 406 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 AKR1C8PQ5T2L2 129 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 SCGB1C1Q8TD33 95 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 RHPN1-AS1Q9BWJ2 59 aa10.68□□□□□ -0.7
SHMT2-217ENST00000555116 PARD6GQ9BYG4 376 aaPredicted RBP10.68□□□□□ -0.7
SHMT2-217ENST00000555116 IGKV1D-37A0A075B6S9 117 aa10.67□□□□□ -0.7
SHMT2-217ENST00000555116 PMS2P5A8MQ11 134 aa10.67□□□□□ -0.7
SHMT2-217ENST00000555116 GUK1Q16774 197 aa10.67□□□□□ -0.7
SHMT2-217ENST00000555116 OR8G2PQ6IF36 304 aa10.67□□□□□ -0.7
SHMT2-217ENST00000555116 TOMM40O96008 361 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 APOHP02749 345 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-217ENST00000555116 DPPA3Q6W0C5 159 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 Q8WTZ3 238 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 B9D2Q9BPU9 175 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 PSMG3Q9BT73 122 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-217ENST00000555116 RSG1Q9BU20 258 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 WDR61Q9GZS3 305 aaKnown RBP10.66□□□□□ -0.7
SHMT2-217ENST00000555116 VSIRQ9H7M9 311 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms