RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 A0A0D9SG52 128 aa16.02■□□□□ 0.15
VPS29-206ENST00000549578 PLP1P60201 277 aa16.02■□□□□ 0.15
VPS29-206ENST00000549578 DEFB114Q30KQ6 69 aa16.02■□□□□ 0.15
VPS29-206ENST00000549578 SAMD5Q5TGI4 173 aa16.02■□□□□ 0.15
VPS29-206ENST00000549578 HSD17B11Q8NBQ5 300 aa16.02■□□□□ 0.15
VPS29-206ENST00000549578 GPR61Q9BZJ8 451 aa16.02■□□□□ 0.15
VPS29-206ENST00000549578 U3KQE9 123 aa16.02■□□□□ 0.15
VPS29-206ENST00000549578 C17orf112F2Z3M2 114 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 TAAR5O14804 337 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 WIPF1O43516 503 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 HYPMO75409 117 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 OR5G3P0C626 314 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 LGALSLQ3ZCW2 172 aaPredicted RBP16.01■□□□□ 0.15
VPS29-206ENST00000549578 CD300EQ496F6 205 aaPredicted RBP16.01■□□□□ 0.15
VPS29-206ENST00000549578 PATE2Q6UY27 113 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 Q6ZRG5 221 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 PPP1R14BQ96C90 147 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 NARS2Q96I59 477 aaKnown RBP16.01■□□□□ 0.15
VPS29-206ENST00000549578 RNF2Q99496 336 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 ARPC5LQ9BPX5 153 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 VSIRQ9H7M9 311 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 CYTL1Q9NRR1 136 aa16.01■□□□□ 0.15
VPS29-206ENST00000549578 BORCS7-ASMTA0A0B4J1R7 106 aa16■□□□□ 0.15
VPS29-206ENST00000549578 PFDN1O60925 122 aa16■□□□□ 0.15
VPS29-206ENST00000549578 TMUB2Q71RG4 321 aa16■□□□□ 0.15
VPS29-206ENST00000549578 UHRF2Q96PU4 802 aa16■□□□□ 0.15
VPS29-206ENST00000549578 TECRQ9NZ01 308 aaKnown RBP16■□□□□ 0.15
VPS29-206ENST00000549578 HIGD1AQ9Y241 93 aa16■□□□□ 0.15
VPS29-206ENST00000549578 A0A1W2PS18 150 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 IZUMO1RA6ND01 250 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 COX7A2P2O60397 106 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 PXDC1Q5TGL8 231 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 ARV1Q9H2C2 271 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 KCNIP2Q9NS61 270 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 KANTRA0A1W2PQU2 76 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 BCL2L11O43521 198 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 BUB3O43684 328 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 ATP6V0CP27449 155 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 BMI1P35226 326 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 GCSAMLQ5JQS6 135 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 TMEM61Q8N0U2 210 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 TMEM37Q8WXS4 190 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 TMEM231Q9H6L2 316 aa15.99■□□□□ 0.15
VPS29-206ENST00000549578 NOTCH1P46531 2555 aa15.98■□□□□ 0.15
VPS29-206ENST00000549578 JTBO76095 146 aa15.98■□□□□ 0.15
VPS29-206ENST00000549578 NKX2-5P52952 324 aaPredicted RBP15.98■□□□□ 0.15
VPS29-206ENST00000549578 GRAMD2BQ96HH9 432 aa15.98■□□□□ 0.15
VPS29-206ENST00000549578 SCRT1Q9BWW7 348 aa15.98■□□□□ 0.15
VPS29-206ENST00000549578 SLC25A39Q9BZJ4 359 aaPredicted RBP15.98■□□□□ 0.15
VPS29-206ENST00000549578 SH3BGRL3Q9H299 93 aa15.98■□□□□ 0.15
VPS29-206ENST00000549578 NBEAL1Q6ZS30 2694 aa15.98■□□□□ 0.15
VPS29-206ENST00000549578 H3BRN7 92 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 FFAR4Q5NUL3 377 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 C10orf113Q5VZT2 155 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 LEMD1Q68G75 181 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 C16orf54Q6UWD8 224 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 TCF24Q7RTU0 167 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 C9orf62Q8N4C0 152 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 SLC25A22Q9H936 323 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 DNAJC4Q9NNZ3 241 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 PFDN2Q9UHV9 154 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 TIMM9Q9Y5J7 89 aa15.97■□□□□ 0.15
VPS29-206ENST00000549578 ELOA3CA0A087WX78 387 aaPredicted RBP15.96■□□□□ 0.15
VPS29-206ENST00000549578 ZNF98A6NK75 572 aa15.96■□□□□ 0.15
VPS29-206ENST00000549578 LINC00305Q7Z4B0 112 aa15.96■□□□□ 0.15
VPS29-206ENST00000549578 OR1L4Q8NGR5 311 aa15.96■□□□□ 0.15
VPS29-206ENST00000549578 GLMPQ8WWB7 406 aa15.96■□□□□ 0.15
VPS29-206ENST00000549578 SHANK2-AS3Q9BTD1 123 aa15.96■□□□□ 0.15
VPS29-206ENST00000549578 ZNF471Q9BX82 626 aaPredicted RBP15.96■□□□□ 0.15
VPS29-206ENST00000549578 IGKV3-7A0A075B6H7 116 aa15.95■□□□□ 0.14
VPS29-206ENST00000549578 KRTAP10-11P60412 298 aa15.95■□□□□ 0.14
VPS29-206ENST00000549578 MORN5Q5VZ52 161 aa15.95■□□□□ 0.14
VPS29-206ENST00000549578 FAM90A2PQ658T7 463 aa15.95■□□□□ 0.14
VPS29-206ENST00000549578 LAMTOR1Q6IAA8 161 aa15.95■□□□□ 0.14
VPS29-206ENST00000549578 LCN12Q6JVE5 192 aa15.95■□□□□ 0.14
VPS29-206ENST00000549578 RBPMS2Q6ZRY4 209 aaKnown RBP15.95■□□□□ 0.14
VPS29-206ENST00000549578 OR2K2Q8NGT1 345 aa15.95■□□□□ 0.14
VPS29-206ENST00000549578 PFDN5Q99471 154 aa15.95■□□□□ 0.14
VPS29-206ENST00000549578 RPL11P62913 178 aaKnown RBP15.94■□□□□ 0.14
VPS29-206ENST00000549578 EGFEM1PQ0D2K5 195 aa15.94■□□□□ 0.14
VPS29-206ENST00000549578 PSMG3Q9BT73 122 aaPredicted RBP15.94■□□□□ 0.14
VPS29-206ENST00000549578 S100A7P31151 101 aa15.94■□□□□ 0.14
VPS29-206ENST00000549578 GUCA2BQ16661 112 aa15.94■□□□□ 0.14
VPS29-206ENST00000549578 BEAN1Q3B7T3 259 aa15.94■□□□□ 0.14
VPS29-206ENST00000549578 C1orf194Q5T5A4 169 aa15.94■□□□□ 0.14
VPS29-206ENST00000549578 OR8I2Q8N0Y5 310 aa15.94■□□□□ 0.14
VPS29-206ENST00000549578 GATAD1Q8WUU5 269 aa15.94■□□□□ 0.14
VPS29-206ENST00000549578 GNPNAT1Q96EK6 184 aaPredicted RBP15.94■□□□□ 0.14
VPS29-206ENST00000549578 SLC25A32Q9H2D1 315 aa15.94■□□□□ 0.14
VPS29-206ENST00000549578 S100A7AQ86SG5 101 aa15.93■□□□□ 0.14
VPS29-206ENST00000549578 GBGT1Q8N5D6 347 aa15.93■□□□□ 0.14
VPS29-206ENST00000549578 OR2G3Q8NGZ4 309 aa15.93■□□□□ 0.14
VPS29-206ENST00000549578 SORL1Q92673 2214 aa15.93■□□□□ 0.14
VPS29-206ENST00000549578 TRAV25A0A0B4J276 109 aa15.92■□□□□ 0.14
VPS29-206ENST00000549578 ZNF785A8K8V0 405 aa15.92■□□□□ 0.14
VPS29-206ENST00000549578 TSPAN4O14817 238 aa15.92■□□□□ 0.14
VPS29-206ENST00000549578 FAM78BQ5VT40 261 aa15.92■□□□□ 0.14
VPS29-206ENST00000549578 SIGLEC15Q6ZMC9 328 aa15.92■□□□□ 0.14
VPS29-206ENST00000549578 SEPSECSQ9HD40 501 aaKnown RBP15.92■□□□□ 0.14
VPS29-206ENST00000549578 TRAV5A0A0B4J249 113 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms