RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 Q9H3A6 140 aa12.61□□□□□ -0.39
LDLR-204ENST00000545707 FBXL15Q9H469 300 aa12.61□□□□□ -0.39
LDLR-204ENST00000545707 MRPL27Q9P0M9 148 aaKnown RBP12.61□□□□□ -0.39
LDLR-204ENST00000545707 INSIG2Q9Y5U4 225 aa12.61□□□□□ -0.39
LDLR-204ENST00000545707 FAM181BA6NEQ2 426 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 SPATA12Q7Z6I5 190 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 TRGV9Q99603 122 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 SIGLEC9Q9Y336 463 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 TLN1Q9Y490 2541 aaKnown RBP12.6□□□□□ -0.39
LDLR-204ENST00000545707 IGHV2-26A0A0B4J1V2 119 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 IGHV1-69-2A0A0G2JMI3 117 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 ETFRF1Q6IPR1 90 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 RASL11AQ6T310 242 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 SSX8Q7RTT4 187 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 EXOC3-AS1Q8N2X6 119 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 STPG4Q8N801 248 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 C8orf31Q8N9H6 132 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 Q8NA96 180 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 TMEM116Q8NCL8 245 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 RPP21Q9H633 154 aaKnown RBP12.6□□□□□ -0.39
LDLR-204ENST00000545707 KLF12Q9Y4X4 402 aa12.6□□□□□ -0.39
LDLR-204ENST00000545707 A0A1B0GXF2 115 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 TCRAP04437 139 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 PSG1P11464 419 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 FOSL1P15407 271 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 STXBP6Q8NFX7 210 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 UQCR10Q9UDW1 63 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 GOLT1BQ9Y3E0 138 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 IGHV1-3A0A0C4DH29 117 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 ASCL5Q7RTU5 278 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 CIARTQ8N365 385 aaPredicted RBP12.59□□□□□ -0.39
LDLR-204ENST00000545707 TEX45Q8NA69 505 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 C22orf15Q8WYQ4 148 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 TP73-AS1Q9UF72 201 aa12.59□□□□□ -0.39
LDLR-204ENST00000545707 TEX22C9J3V5 150 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 P01737 135 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 CRYGBP07316 175 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 KLF5Q13887 457 aaPredicted RBP12.58□□□□□ -0.4
LDLR-204ENST00000545707 PPP1R27Q86WC6 154 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 KAAG1Q9UBP8 84 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 ASH1LQ9NR48 2969 aaKnown RBP12.58□□□□□ -0.4
LDLR-204ENST00000545707 OR2J3O76001 311 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 RBP4P02753 201 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 HNRNPA3P51991 378 aaKnown RBP12.58□□□□□ -0.4
LDLR-204ENST00000545707 LINC00173Q6ZV60 143 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 C5orf17Q8NAS9 161 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 C8orf46Q8TAG6 207 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 CHRDL1Q9BU40 450 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 JKAMPQ9P055 326 aa12.58□□□□□ -0.4
LDLR-204ENST00000545707 ABCA4P78363 2273 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 C2orf70A6NJV1 201 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 TOMM40O96008 361 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 LTAP01374 205 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 IGLV1-47P01700 117 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 HBBP68871 147 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 Q6ZVH6 145 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 MRPL52Q86TS9 123 aaKnown RBP12.57□□□□□ -0.4
LDLR-204ENST00000545707 C17orf77Q96MU5 243 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 OR8B2Q96RD0 313 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 PRSS22Q9GZN4 317 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 F11RQ9Y624 299 aaKnown RBP12.57□□□□□ -0.4
LDLR-204ENST00000545707 VSTM5A8MXK1 200 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 CA7P43166 264 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 ZNF138P52744 262 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 COL5A1-AS1Q5SY13 56 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 PVRIGQ6DKI7 326 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 PRNTQ86SH4 94 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 RALYQ9UKM9 306 aaKnown RBP12.57□□□□□ -0.4
LDLR-204ENST00000545707 HIGD1AQ9Y241 93 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 S4R3C0 116 aa12.57□□□□□ -0.4
LDLR-204ENST00000545707 C19orf71A6NCJ1 209 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 BUB1B-PAK6H3BSN5 160 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 IGLC1P0CG04 106 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 PLGLAQ15195 96 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 GOLT1AQ6ZVE7 132 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 OR8B3Q8NGG8 313 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 DAZAP1Q96EP5 407 aaKnown RBP12.56□□□□□ -0.4
LDLR-204ENST00000545707 LAMTOR2Q9Y2Q5 125 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 A8MWL6 223 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 BTF3P20290 206 aaKnown RBP12.56□□□□□ -0.4
LDLR-204ENST00000545707 HINT1P49773 126 aaPredicted RBP12.56□□□□□ -0.4
LDLR-204ENST00000545707 SRSF12Q8WXF0 261 aaKnown RBP12.56□□□□□ -0.4
LDLR-204ENST00000545707 FMC1Q96HJ9 113 aa12.56□□□□□ -0.4
LDLR-204ENST00000545707 SLC25A39Q9BZJ4 359 aaPredicted RBP12.56□□□□□ -0.4
LDLR-204ENST00000545707 IGLL1P15814 213 aa12.55□□□□□ -0.4
LDLR-204ENST00000545707 LDLRAD2Q5SZI1 272 aa12.55□□□□□ -0.4
LDLR-204ENST00000545707 ATP5L2Q7Z4Y8 100 aa12.55□□□□□ -0.4
LDLR-204ENST00000545707 NBASA2RRP1 2371 aa12.55□□□□□ -0.4
LDLR-204ENST00000545707 NDUFB8O95169 186 aa12.54□□□□□ -0.4
LDLR-204ENST00000545707 LINC01560Q8TB33 94 aa12.54□□□□□ -0.4
LDLR-204ENST00000545707 MCRIP2Q9BUT9 160 aaKnown RBP12.54□□□□□ -0.4
LDLR-204ENST00000545707 SPTA1P02549 2419 aa12.54□□□□□ -0.4
LDLR-204ENST00000545707 ARHGAP32A7KAX9 2087 aa12.54□□□□□ -0.4
LDLR-204ENST00000545707 LY6HO94772 140 aa12.54□□□□□ -0.4
LDLR-204ENST00000545707 COL8A1P27658 744 aa12.54□□□□□ -0.4
LDLR-204ENST00000545707 RPEQ96AT9 228 aa12.54□□□□□ -0.4
LDLR-204ENST00000545707 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.53□□□□□ -0.4
LDLR-204ENST00000545707 TSPOP30536 169 aa12.53□□□□□ -0.4
LDLR-204ENST00000545707 KLF17Q5JT82 389 aaPredicted RBP12.53□□□□□ -0.4
LDLR-204ENST00000545707 TIMM8BQ9Y5J9 83 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms