RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CNIH2Q6PI25 160 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 ZNF818PQ6ZRF7 136 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 TMED4Q7Z7H5 227 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 TMEM17Q86X19 198 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 FAM219AQ8IW50 185 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 BAP18Q8IXM2 172 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 CMTM1Q8IZ96 169 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 OR4A16Q8NH70 328 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 PHYHIPQ92561 330 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 TMEM203Q969S6 136 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 GFI1Q99684 422 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 ATG5Q9H1Y0 275 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 DNAJC4Q9NNZ3 241 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 MRPL36Q9P0J6 103 aaKnown RBP3.21□□□□□ -1.9
LIMS1-214ENST00000542845 PRNDQ9UKY0 176 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 DIMT1Q9UNQ2 313 aaKnown RBP3.21□□□□□ -1.9
LIMS1-214ENST00000542845 LY96Q9Y6Y9 160 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 A0A0J9YX75 114 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 PLAC8L1A1L4L8 177 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 METTL21EPA6NDL7 271 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 EFCAB10A6NFE3 127 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 MYL12BO14950 172 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 RBFOX2O43251 390 aaKnown RBP eCLIP3.2□□□□□ -1.9
LIMS1-214ENST00000542845 CLN5O75503 358 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 WBP4O75554 376 aaKnown RBP3.2□□□□□ -1.9
LIMS1-214ENST00000542845 ADAP1O75689 374 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 B3GALNT1O75752 331 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 IL4P05112 153 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 OPRK1P41145 380 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 WNT4P56705 351 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 DHODHQ02127 395 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 FHL2Q14192 279 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 PAPPA-AS1Q5QFB9 102 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 Q6ZS49 121 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 SCXQ7RTU7 201 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 TMEM144Q7Z5S9 345 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 MS4A15Q8N5U1 240 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 Q8N814 137 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 ZNF485Q8NCK3 441 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 ZNF555Q8NEP9 628 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 OR10J6PQ8NGY7 276 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 NTN5Q8WTR8 489 aaPredicted RBP3.2□□□□□ -1.9
LIMS1-214ENST00000542845 NUDCD2Q8WVJ2 157 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 FCAMRQ8WWV6 532 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 PBDC1Q9BVG4 233 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 RPRMQ9NS64 109 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 ZNF446Q9NWS9 450 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 COMMD9Q9P000 198 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 KLK11Q9UBX7 282 aa3.2□□□□□ -1.9
LIMS1-214ENST00000542845 BUB3O43684 328 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 PPYP01298 95 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 RLN2P04090 185 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 FGF2P09038 288 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 UCHL1P09936 223 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 ELK1P19419 428 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 EVI2AP22794 236 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 DTYMKP23919 212 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 F2RP25116 425 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 HNRNPA3P51991 378 aaKnown RBP3.19□□□□□ -1.9
LIMS1-214ENST00000542845 GNG2P59768 71 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 KRTAP10-4P60372 401 aaPredicted RBP3.19□□□□□ -1.9
LIMS1-214ENST00000542845 SEC61BP60468 96 aaKnown RBP3.19□□□□□ -1.9
LIMS1-214ENST00000542845 B2MP61769 119 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 RHOBP62745 196 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 GNGT1P63211 74 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 PRCDQ00LT1 54 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 DNAL1Q4LDG9 190 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 C1orf146Q5VVC0 180 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 SPATA31B1PQ5VZV4 182 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 TMEM182Q6ZP80 229 aaPredicted RBP3.19□□□□□ -1.9
LIMS1-214ENST00000542845 H2BFWTQ7Z2G1 175 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 OR6F1Q8NGZ6 308 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 PYDC1Q8WXC3 89 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 C16orf74Q96GX8 76 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 TSC22D3Q99576 134 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 SLC25A39Q9BZJ4 359 aaPredicted RBP3.19□□□□□ -1.9
LIMS1-214ENST00000542845 DPH3P1Q9H4G8 78 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 Q9HAA7 133 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 DOK5Q9P104 306 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 ANXA10Q9UJ72 324 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 V9GY05 133 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 LRP2P98164 4655 aa3.19□□□□□ -1.9
LIMS1-214ENST00000542845 PKHD1L1Q86WI1 4243 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.18□□□□□ -1.9
LIMS1-214ENST00000542845 TRAV30A0A087WSZ9 112 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 LRCOL1A6NCL2 159 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 TMEM235A6NFC5 223 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 ZNF98A6NK75 572 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 LECT2O14960 151 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 CRXO43186 299 aaPredicted RBP3.18□□□□□ -1.9
LIMS1-214ENST00000542845 GSTZ1O43708 216 aaPredicted RBP3.18□□□□□ -1.9
LIMS1-214ENST00000542845 PGLYRP1O75594 196 aaPredicted RBP3.18□□□□□ -1.9
LIMS1-214ENST00000542845 IGKV1-17P01599 117 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 C1QBP02746 253 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 MT1HL1P0DM35 61 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 TSPOP30536 169 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 PSMB3P49720 205 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 SUB1P53999 127 aaKnown RBP eCLIP3.18□□□□□ -1.9
LIMS1-214ENST00000542845 OR10A3P58181 314 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 RPL37AP61513 92 aaKnown RBP3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms