RNA–Protein interactions for RNA: ENST00000542552.1

ECHDC2-223, Transcript of enoyl-CoA hydratase domain containing 2, human

TSL 1 (best)

Gene ECHDC2, Length 981 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-223	ENST00000542552	AKR1C1	Q04828	323 aa		11.35	□□□□□ -0.59
ECHDC2-223	ENST00000542552	ARL16	Q0P5N6	197 aa		11.35	□□□□□ -0.59
ECHDC2-223	ENST00000542552	DEFB135	Q30KP9	77 aa		11.35	□□□□□ -0.59
ECHDC2-223	ENST00000542552	AGRN	O00468	2067 aa		11.35	□□□□□ -0.59
ECHDC2-223	ENST00000542552	PLEC	Q15149	4684 aa	Known RBP	11.35	□□□□□ -0.59
ECHDC2-223	ENST00000542552	GATA2	P23769	480 aa	Predicted RBP	11.34	□□□□□ -0.59
ECHDC2-223	ENST00000542552	BPIFC	Q8NFQ6	507 aa		11.34	□□□□□ -0.59
ECHDC2-223	ENST00000542552	OR10P1	Q8NGE3	313 aa		11.34	□□□□□ -0.59
ECHDC2-223	ENST00000542552	MARVELD1	Q9BSK0	173 aa		11.34	□□□□□ -0.59
ECHDC2-223	ENST00000542552	GGACT	Q9BVM4	153 aa		11.34	□□□□□ -0.59
ECHDC2-223	ENST00000542552	NPVF	Q9HCQ7	196 aa		11.34	□□□□□ -0.59
ECHDC2-223	ENST00000542552	FBXL17	Q9UF56	701 aa		11.34	□□□□□ -0.59
ECHDC2-223	ENST00000542552	DEDD	O75618	318 aa		11.33	□□□□□ -0.6
ECHDC2-223	ENST00000542552	RRAS2	P62070	204 aa	Predicted RBP	11.33	□□□□□ -0.6
ECHDC2-223	ENST00000542552	GSG1L	Q6UXU4	331 aa		11.33	□□□□□ -0.6
ECHDC2-223	ENST00000542552	CYP2G1P	Q6ZSU1	146 aa		11.33	□□□□□ -0.6
ECHDC2-223	ENST00000542552	TRPT1	Q86TN4	253 aa	Known RBP	11.33	□□□□□ -0.6
ECHDC2-223	ENST00000542552	LSM5	Q9Y4Y9	91 aa	Known RBP	11.33	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SMCO3	A2RU48	225 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	INMT-MINDY4	F8WBC2	141 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552		L7N2F9	121 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	PRAF2	O60831	178 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	PLP1	P60201	277 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SNRPD3	P62318	126 aa	Known RBP	11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SELENOT	P62341	195 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	VAMP2	P63027	116 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	STH	Q8IWL8	128 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	GPN1	Q9HCN4	374 aa	Predicted RBP	11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	RYR2	Q92736	4967 aa		11.32	□□□□□ -0.6
ECHDC2-223	ENST00000542552	ZNF98	A6NK75	572 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	KNCN	A6PVL3	124 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SOCS3	O14543	225 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	GIG44	P09565	113 aa	Predicted RBP	11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	ORM2	P19652	201 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	DEFA1	P59665	94 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	DEFA3	P59666	94 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	PSMG4	Q5JS54	123 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	ZFAND6	Q6FIF0	208 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	TEPP	Q6URK8	271 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	OR8I2	Q8N0Y5	310 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	GATAD1	Q8WUU5	269 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	PPP1R14B	Q96C90	147 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	C17orf77	Q96MU5	243 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	MGAT4C	Q9UBM8	478 aa		11.31	□□□□□ -0.6
ECHDC2-223	ENST00000542552	CA1	P00915	261 aa	Predicted RBP	11.3	□□□□□ -0.6
ECHDC2-223	ENST00000542552	RAB32	Q13637	225 aa		11.3	□□□□□ -0.6
ECHDC2-223	ENST00000542552	ACTL10	Q5JWF8	245 aa		11.3	□□□□□ -0.6
ECHDC2-223	ENST00000542552	IL17D	Q8TAD2	202 aa		11.3	□□□□□ -0.6
ECHDC2-223	ENST00000542552	TMEM147	Q9BVK8	224 aa		11.3	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SLC25A32	Q9H2D1	315 aa		11.3	□□□□□ -0.6
ECHDC2-223	ENST00000542552	LYRM2	Q9NU23	88 aa	Predicted RBP	11.3	□□□□□ -0.6
ECHDC2-223	ENST00000542552		A0A0J9YWU9	116 aa		11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	FAM24A	A6NFZ4	105 aa		11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	LINC00869	P0C866	280 aa		11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SPP1	P10451	314 aa		11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	ATF4	P18848	351 aa	Predicted RBP	11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	PVALB	P20472	110 aa	Predicted RBP	11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SLC38A11	Q08AI6	406 aa		11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	MORN3	Q6PF18	240 aa	Predicted RBP	11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	OR1B1	Q8NGR6	318 aa		11.29	□□□□□ -0.6
ECHDC2-223	ENST00000542552	DNAH1	Q9P2D7	4330 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552		H3BRN7	92 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	HYPM	O75409	117 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	CST7	O76096	145 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	S100A7	P31151	101 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	PSMB3	P49720	205 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	BCAP31	P51572	246 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	CAV2	P51636	162 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	S100A10	P60903	97 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	EWSR1	Q01844	656 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	VWC2	Q2TAL6	325 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	TMEM41B	Q5BJD5	291 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	PATE2	Q6UY27	113 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	GPR82	Q96P67	336 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SHANK2-AS3	Q9BTD1	123 aa		11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	11.28	□□□□□ -0.6
ECHDC2-223	ENST00000542552	IGSF23	A1L1A6	192 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552		H3BMM0	161 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	ISLR	O14498	428 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	GOSR2	O14653	212 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	AGPAT2	O15120	278 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	SIX6	O95475	246 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	C4BPB	P20851	252 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	ID1	P41134	155 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	GALR1	P47211	349 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	MEOX2	P50222	304 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	SULT1A1	P50225	295 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	PXDC1	Q5TGL8	231 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	SAMD13	Q5VXD3	122 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	ZNF546	Q86UE3	836 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	TMEM252	Q8N6L7	170 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	MGST2	Q99735	147 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	RARRES2	Q99969	163 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	RSG1	Q9BU20	258 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	SCRT1	Q9BWW7	348 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	NMES1	Q9C002	83 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	SLC25A22	Q9H936	323 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	DOK5	Q9P104	306 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	HIGD1A	Q9Y241	93 aa		11.27	□□□□□ -0.61
ECHDC2-223	ENST00000542552	HLA-DRB4	P13762	266 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms