RNA–Protein interactions for RNA: ENST00000540812.1

TRIM65-203, Transcript of tripartite motif containing 65, human

TSL 2

Gene TRIM65, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM65-203	ENST00000540812	AP2S1	P53680	142 aa	Predicted RBP	11.67	□□□□□ -0.54
TRIM65-203	ENST00000540812	SIGLEC15	Q6ZMC9	328 aa		11.67	□□□□□ -0.54
TRIM65-203	ENST00000540812	OR1S1	Q8NH92	325 aa		11.67	□□□□□ -0.54
TRIM65-203	ENST00000540812	ACY3	Q96HD9	319 aa		11.67	□□□□□ -0.54
TRIM65-203	ENST00000540812	NUDT15	Q9NV35	164 aa		11.67	□□□□□ -0.54
TRIM65-203	ENST00000540812	BUB3	O43684	328 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	TOMM40	O96008	361 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	AMBP	P02760	352 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	NPY1R	P25929	384 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	DEFB1	P60022	68 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	SNRPD3	P62318	126 aa	Known RBP	11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	IFITM3	Q01628	133 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	GGNBP1	Q5YKI7	109 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	MITD1	Q8WV92	249 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	NRN1	Q9NPD7	142 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812		U3KQ87	197 aa		11.66	□□□□□ -0.54
TRIM65-203	ENST00000540812	TRAV6	A0A075B6T7	132 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812		A0A1B0GVY2	172 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	H2AFB2	P0C5Z0	115 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	RD3L	P0DJH9	198 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	PSG1	P11464	419 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	ATP5I	P56385	69 aa	Predicted RBP	11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	GDF5OS	Q5U4N7	250 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	NOXA1	Q86UR1	476 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	OR51G1	Q8NGK1	321 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	DTD1	Q8TEA8	209 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	RBKS	Q9H477	322 aa		11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	SEPSECS	Q9HD40	501 aa	Known RBP	11.65	□□□□□ -0.54
TRIM65-203	ENST00000540812	ADAP1	O75689	374 aa		11.64	□□□□□ -0.55
TRIM65-203	ENST00000540812	IFNA21	P01568	189 aa		11.64	□□□□□ -0.55
TRIM65-203	ENST00000540812	HLA-DRB4	P13762	266 aa		11.64	□□□□□ -0.55
TRIM65-203	ENST00000540812	FXYD7	P58549	80 aa		11.64	□□□□□ -0.55
TRIM65-203	ENST00000540812	ETFRF1	Q6IPR1	90 aa		11.64	□□□□□ -0.55
TRIM65-203	ENST00000540812	GSG1L	Q6UXU4	331 aa		11.64	□□□□□ -0.55
TRIM65-203	ENST00000540812	C1QTNF4	Q9BXJ3	329 aa		11.64	□□□□□ -0.55
TRIM65-203	ENST00000540812	HLA-DRB4	X5D2U9	266 aa		11.64	□□□□□ -0.55
TRIM65-203	ENST00000540812	MED6	O75586	246 aa		11.63	□□□□□ -0.55
TRIM65-203	ENST00000540812	NUTF2	P61970	127 aa	Known RBP	11.63	□□□□□ -0.55
TRIM65-203	ENST00000540812	ZNF705A	Q6ZN79	300 aa	Predicted RBP	11.63	□□□□□ -0.55
TRIM65-203	ENST00000540812	LINC00336	Q6ZUF6	198 aa		11.63	□□□□□ -0.55
TRIM65-203	ENST00000540812	POM121L12	Q8N7R1	296 aa		11.63	□□□□□ -0.55
TRIM65-203	ENST00000540812	ENKUR	Q8TC29	256 aa		11.63	□□□□□ -0.55
TRIM65-203	ENST00000540812	RNF125	Q96EQ8	232 aa		11.63	□□□□□ -0.55
TRIM65-203	ENST00000540812	HSPG2	P98160	4391 aa		11.63	□□□□□ -0.55
TRIM65-203	ENST00000540812		M0R2N4	97 aa		11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	IFNA10	P01566	189 aa		11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	IGKV3-20	P01619	116 aa		11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	NKX2-1	P43699	371 aa	Predicted RBP	11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	EMP1	P54849	157 aa		11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	DEFA1	P59665	94 aa		11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	DEFA3	P59666	94 aa		11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	ZNF431	Q8TF32	576 aa	Predicted RBP	11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	NDUFAF3	Q9BU61	184 aa		11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	PBDC1	Q9BVG4	233 aa		11.62	□□□□□ -0.55
TRIM65-203	ENST00000540812	LRP1B	Q9NZR2	4599 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	IGKV1D-37	A0A075B6S9	117 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	SYNGR2	O43760	224 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	IL5	P05113	134 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812		P0DMU3	169 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	FAM231A	P0DMU4	169 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	FAM231C	P0DMU5	169 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	ID3	Q02535	119 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	ZNF90	Q03938	601 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	LINC00052	Q96N35	136 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	CIB3	Q96Q77	187 aa	Predicted RBP	11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	ABCA13	Q86UQ4	5058 aa		11.61	□□□□□ -0.55
TRIM65-203	ENST00000540812	IGHV3OR16-12	A0A075B7B8	117 aa		11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	ZNF705F	A8MVS1	300 aa	Predicted RBP	11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	RTL8C	O15255	209 aa		11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	ZNF705D	P0CH99	300 aa	Predicted RBP	11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	ZNF705B	P0CI00	300 aa	Predicted RBP	11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	NRARP	Q7Z6K4	114 aa		11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	OR4D5	Q8NGN0	318 aa		11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	NEU1	Q99519	415 aa		11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	SEC22C	Q9BRL7	303 aa		11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	SAV1	Q9H4B6	383 aa	Predicted RBP	11.6	□□□□□ -0.55
TRIM65-203	ENST00000540812	SOCS3	O14543	225 aa		11.59	□□□□□ -0.55
TRIM65-203	ENST00000540812	RPP30	P78346	268 aa	Known RBP	11.59	□□□□□ -0.55
TRIM65-203	ENST00000540812	GAMT	Q14353	236 aa		11.59	□□□□□ -0.55
TRIM65-203	ENST00000540812	IAH1	Q2TAA2	248 aa	Predicted RBP	11.59	□□□□□ -0.55
TRIM65-203	ENST00000540812	OR8G2P	Q6IF36	304 aa		11.59	□□□□□ -0.55
TRIM65-203	ENST00000540812	C12orf45	Q8N5I9	185 aa	Predicted RBP	11.59	□□□□□ -0.55
TRIM65-203	ENST00000540812	ZNF709	Q8N972	641 aa		11.59	□□□□□ -0.55
TRIM65-203	ENST00000540812	PLA2G2E	Q9NZK7	142 aa		11.59	□□□□□ -0.55
TRIM65-203	ENST00000540812	PRSS29P	A6NIE9	313 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	ZFP92	A6NM28	416 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	SPART-AS1	P0CW21	52 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	IAPP	P10997	89 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	GPX4	P36969	197 aa	Predicted RBP	11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	NUP62	P37198	522 aa	Predicted RBP	11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	LYZ	P61626	148 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	RAB11A	P62491	216 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	FOXI2	Q6ZQN5	318 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	MARVELD1	Q9BSK0	173 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	MAGT1	Q9H0U3	335 aa		11.58	□□□□□ -0.56
TRIM65-203	ENST00000540812	SMIM9	A6NGZ8	99 aa		11.57	□□□□□ -0.56
TRIM65-203	ENST00000540812		F6UB75	175 aa		11.57	□□□□□ -0.56
TRIM65-203	ENST00000540812	WRB	O00258	174 aa		11.57	□□□□□ -0.56
TRIM65-203	ENST00000540812	PRAF2	O60831	178 aa		11.57	□□□□□ -0.56
TRIM65-203	ENST00000540812	ID1	P41134	155 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms