RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SPATA31B1PQ5VZV4 182 aa11.46□□□□□ -0.58
USP3-204ENST00000540797 WDR86Q86TI4 376 aa11.46□□□□□ -0.58
USP3-204ENST00000540797 DOCK7Q96N67 2140 aa11.46□□□□□ -0.58
USP3-204ENST00000540797 GRNP28799 593 aaKnown RBP11.46□□□□□ -0.58
USP3-204ENST00000540797 DUX4L9Q6RFH8 374 aaPredicted RBP11.46□□□□□ -0.58
USP3-204ENST00000540797 ZNF562Q6V9R5 426 aa11.46□□□□□ -0.58
USP3-204ENST00000540797 C9orf139Q6ZV77 190 aa11.46□□□□□ -0.58
USP3-204ENST00000540797 ATP5LO75964 103 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 RPL24P83731 157 aaKnown RBP11.45□□□□□ -0.58
USP3-204ENST00000540797 TMEM183AQ8IXX5 376 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 SRSF8Q9BRL6 282 aaKnown RBP11.45□□□□□ -0.58
USP3-204ENST00000540797 REG4Q9BYZ8 158 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 ST20Q9HBF5 79 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 OR11H12B2RN74 326 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 CACNG7P62955 275 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 ACTL10Q5JWF8 245 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 TRAV9-1A0A075B6T8 112 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 NPIPB5A8MRT5 1133 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 EXOC3-AS1Q8N2X6 119 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 RHPN1-AS1Q9BWJ2 59 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 STAG3L2P0CL84 134 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 STAG3L3P0CL85 134 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 SYNJ2BPP57105 145 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 TEX36Q5VZQ5 186 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 MBD3L1Q8WWY6 194 aa11.45□□□□□ -0.58
USP3-204ENST00000540797 HELZP42694 1942 aaKnown RBP11.44□□□□□ -0.58
USP3-204ENST00000540797 ATP6V0E1O15342 81 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 PET117Q6UWS5 81 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 RSPO3Q9BXY4 272 aaPredicted RBP11.44□□□□□ -0.58
USP3-204ENST00000540797 GPR61Q9BZJ8 451 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 OVOL3O00110 214 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 MYLKQ15746 1914 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 RNASE2P10153 161 aaKnown RBP11.44□□□□□ -0.58
USP3-204ENST00000540797 CIDEAO60543 219 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 FCN3O75636 299 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 OR11H1Q8NG94 326 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 OR11H2Q8NH07 326 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 OSTCQ9NRP0 149 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 TOMM7Q9P0U1 55 aa11.44□□□□□ -0.58
USP3-204ENST00000540797 H3BRM9 83 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 NCOR1P1Q9H4R4 102 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 SOD3P08294 240 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 SLC25A34Q6PIV7 304 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 MRAP2Q96G30 205 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 DAZ1Q9NQZ3 744 aaKnown RBP11.43□□□□□ -0.58
USP3-204ENST00000540797 IGKV1-6A0A0C4DH72 117 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 TOMM40O96008 361 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 SEPSECSQ9HD40 501 aaKnown RBP11.43□□□□□ -0.58
USP3-204ENST00000540797 OCC1Q8TAD7 63 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 MPDZO75970 2070 aa11.43□□□□□ -0.58
USP3-204ENST00000540797 LOC107984156A0A0G2JMH3 177 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 ARL17AQ8IVW1 177 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 ATOH7Q8N100 152 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 OR13C6PQ8NH95 151 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 KIAA2026Q5HYC2 2103 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 TECTAO75443 2155 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 A0A087WWC5 75 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 ARL6IP6Q8N6S5 226 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 A0A1W2PPI3 338 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 PGPEP1LA6NFU8 196 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 SHISA9B4DS77 424 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 DMRTC2Q8IXT2 367 aaPredicted RBP11.42□□□□□ -0.58
USP3-204ENST00000540797 FAM110DQ8TAY7 271 aaPredicted RBP11.42□□□□□ -0.58
USP3-204ENST00000540797 CNTFRP26992 372 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 ERASQ7Z444 233 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 DTX2Q86UW9 622 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 FOXC2Q99958 501 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 A0A0G2JRQ6 117 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 SRRM4A7MD48 611 aaKnown RBP11.42□□□□□ -0.58
USP3-204ENST00000540797 C15orf62A8K5M9 175 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 JOSD1Q15040 202 aaPredicted RBP11.42□□□□□ -0.58
USP3-204ENST00000540797 TMEM190Q8WZ59 177 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 RCHY1Q96PM5 261 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 PRO3102Q9H379 93 aa11.42□□□□□ -0.58
USP3-204ENST00000540797 DOCK9Q9BZ29 2069 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 TP53BP1Q12888 1972 aaPredicted RBP11.41□□□□□ -0.58
USP3-204ENST00000540797 FXYD7P58549 80 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 C17orf58Q2M2W7 97 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 LBHQ53QV2 105 aaPredicted RBP11.41□□□□□ -0.58
USP3-204ENST00000540797 CFAP161Q6P656 301 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 F2Z2F3 143 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 ZNF138P52744 262 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 RSPO1Q2MKA7 263 aaPredicted RBP11.41□□□□□ -0.58
USP3-204ENST00000540797 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.41□□□□□ -0.58
USP3-204ENST00000540797 RNASE1P07998 156 aaKnown RBP11.41□□□□□ -0.58
USP3-204ENST00000540797 CDX1P47902 265 aaPredicted RBP11.41□□□□□ -0.58
USP3-204ENST00000540797 SSBP4Q9BWG4 385 aaPredicted RBP11.41□□□□□ -0.58
USP3-204ENST00000540797 MRPS16Q9Y3D3 137 aaKnown RBP11.41□□□□□ -0.58
USP3-204ENST00000540797 TRAV8-6A0A0B4J262 113 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 MLANAQ16655 118 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 C1QTNF4Q9BXJ3 329 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 WNK2Q9Y3S1 2297 aa11.41□□□□□ -0.58
USP3-204ENST00000540797 ZNF415Q09FC8 603 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 A8MXK9 166 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 NDUFS7O75251 213 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 MALP21145 153 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 ZNF833PQ6ZTB9 187 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 IL17RELQ6ZVW7 336 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 UBE2DNLQ8IWF7 75 aa11.4□□□□□ -0.58
USP3-204ENST00000540797 UQCR10Q9UDW1 63 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms