RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 MED28Q9H204 178 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 TMEM231Q9H6L2 316 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 TENM3Q9P273 2699 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 E5RGE8 158 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 AGPAT2O15120 278 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 FABP1P07148 127 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 BMI1P35226 326 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 HAGHQ16775 308 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 VWC2Q2TAL6 325 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 Q5BKY6 102 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 LEMD1Q68G75 181 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 PATE2Q6UY27 113 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 OR1B1Q8NGR6 318 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 MAP6D1Q9H9H5 199 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 MBD2Q9UBB5 411 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 SLC45A2Q9UMX9 530 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 WDR83OSQ9Y284 106 aa11.69□□□□□ -0.54
RPAIN-206ENST00000539417 NBEAL2Q6ZNJ1 2754 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 UBE2L5PA0A1B0GUS4 154 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 K7EQG2 157 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 RLN2P04090 185 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 LINC00869P0C866 280 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 CD300CQ08708 224 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 STX12Q86Y82 276 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 DCANP1Q8TF63 244 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 GRAMD2BQ96HH9 432 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 NARS2Q96I59 477 aaKnown RBP11.68□□□□□ -0.54
RPAIN-206ENST00000539417 C17orf77Q96MU5 243 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 UQCC1Q9NVA1 299 aa11.68□□□□□ -0.54
RPAIN-206ENST00000539417 DNASE2O00115 360 aaPredicted RBP11.67□□□□□ -0.54
RPAIN-206ENST00000539417 S100A11P31949 105 aa11.67□□□□□ -0.54
RPAIN-206ENST00000539417 SIGLEC15Q6ZMC9 328 aa11.67□□□□□ -0.54
RPAIN-206ENST00000539417 UHRF2Q96PU4 802 aa11.67□□□□□ -0.54
RPAIN-206ENST00000539417 TMEM147Q9BVK8 224 aa11.67□□□□□ -0.54
RPAIN-206ENST00000539417 SCRT1Q9BWW7 348 aa11.67□□□□□ -0.54
RPAIN-206ENST00000539417 ZNF98A6NK75 572 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 DEFB131AP59861 70 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 PLP1P60201 277 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 PAFAH1B2P68402 229 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 OR5C1Q8NGR4 320 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 GGTLC1Q9BX51 225 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 ARL6Q9H0F7 186 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 SLC25A32Q9H2D1 315 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 RETNQ9HD89 108 aa11.66□□□□□ -0.54
RPAIN-206ENST00000539417 CFDP00746 253 aaPredicted RBP11.65□□□□□ -0.54
RPAIN-206ENST00000539417 CD5P06127 495 aa11.65□□□□□ -0.54
RPAIN-206ENST00000539417 ZNF688P0C7X2 276 aa11.65□□□□□ -0.54
RPAIN-206ENST00000539417 LYL1P12980 280 aa11.65□□□□□ -0.54
RPAIN-206ENST00000539417 CLINT1Q14677 625 aa11.65□□□□□ -0.54
RPAIN-206ENST00000539417 MIC13Q5XKP0 118 aa11.65□□□□□ -0.54
RPAIN-206ENST00000539417 THAP6Q8TBB0 222 aa11.65□□□□□ -0.54
RPAIN-206ENST00000539417 TM2D3Q9BRN9 247 aa11.65□□□□□ -0.54
RPAIN-206ENST00000539417 SLC25A22Q9H936 323 aa11.65□□□□□ -0.54
RPAIN-206ENST00000539417 TRAV2A0A0B4J234 112 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 HELTA6NFD8 242 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 H3BRN7 92 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 HYPMO75409 117 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 OR5G3P0C626 314 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 CAMLGP49069 296 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 SELENOTP62341 195 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 HBG1P69891 147 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 HBG2P69892 147 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 PRR20EP86478 221 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 PRR20CP86479 221 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 PRR20DP86480 221 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 PRR20BP86481 221 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 PRR20AP86496 221 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 BAXQ07812 192 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 MORN5Q5VZ52 161 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 TMEM37Q8WXS4 190 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 SLC25A39Q9BZJ4 359 aaPredicted RBP11.64□□□□□ -0.55
RPAIN-206ENST00000539417 SLC25A31Q9H0C2 315 aa11.64□□□□□ -0.55
RPAIN-206ENST00000539417 NHLRC4P0CG21 123 aaPredicted RBP11.63□□□□□ -0.55
RPAIN-206ENST00000539417 RPL35AP18077 110 aaKnown RBP11.63□□□□□ -0.55
RPAIN-206ENST00000539417 FGF7P21781 194 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 RPL12P30050 165 aaKnown RBP11.63□□□□□ -0.55
RPAIN-206ENST00000539417 DEFB1P60022 68 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 C1orf194Q5T5A4 169 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 ZNF546Q86UE3 836 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 OR8I2Q8N0Y5 310 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 ST6GAL2Q96JF0 529 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 FAM110AQ9BQ89 295 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 SHANK2-AS3Q9BTD1 123 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 SMIM3Q9BZL3 60 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 WFDC1Q9HC57 220 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 NRN1Q9NPD7 142 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 HIGD1AQ9Y241 93 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 HSPB11Q9Y547 144 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 G3V3Q6 166 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 SOCS3O14543 225 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 OPCMLQ14982 345 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 ATP6V1FQ16864 119 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 ARV1Q9H2C2 271 aa11.63□□□□□ -0.55
RPAIN-206ENST00000539417 DNAH7Q8WXX0 4024 aa11.62□□□□□ -0.55
RPAIN-206ENST00000539417 LOC102724200A0A096LPH7 203 aaPredicted RBP11.62□□□□□ -0.55
RPAIN-206ENST00000539417 KNCNA6PVL3 124 aa11.62□□□□□ -0.55
RPAIN-206ENST00000539417 AP2S1P53680 142 aaPredicted RBP11.62□□□□□ -0.55
RPAIN-206ENST00000539417 ZFP69Q49AA0 526 aa11.62□□□□□ -0.55
RPAIN-206ENST00000539417 RCHY1Q96PM5 261 aa11.62□□□□□ -0.55
RPAIN-206ENST00000539417 RFNGQ9Y644 331 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms