RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 C15orf53Q8NAA6 179 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 OR4C16Q8NGL9 310 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 SMIM4Q8WVI0 70 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 PRRT1Q99946 306 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 MIXL1Q9H2W2 232 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 LRP1BQ9NZR2 4599 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 A0A0B4J2A0 478 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 SNRPGP15A8MWD9 76 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 FABP1P07148 127 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 AKAIN1P0CW23 69 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 HTN3P15516 51 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 ALDH3B2P48448 385 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 MEOX2P50222 304 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 SMCO1Q147U7 214 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 RRN3P1Q2M238 152 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 EBLN2Q6P2I7 272 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 SLC35E1Q96K37 410 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 NAA50Q9GZZ1 169 aaKnown RBP9.59□□□□□ -0.87
SS18-204ENST00000539244 RBKSQ9H477 322 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 SHPKQ9UHJ6 478 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 KCNIP3Q9Y2W7 256 aa9.59□□□□□ -0.87
SS18-204ENST00000539244 F6UB75 175 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 CTDSPLO15194 276 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 LYZP61626 148 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 DAD1P61803 113 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 AMTNQ6UX39 209 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 IGF2BP2-AS1Q96M15 143 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 TRGV9Q99603 122 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 C7orf50Q9BRJ6 194 aaKnown RBP9.58□□□□□ -0.88
SS18-204ENST00000539244 RPRMQ9NS64 109 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 DOK5Q9P104 306 aa9.58□□□□□ -0.88
SS18-204ENST00000539244 CDK2AP2O75956 126 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 LYZL2Q7Z4W2 148 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 OR8I2Q8N0Y5 310 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 OR51S1Q8NGJ8 323 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 C20orf173Q96LM9 149 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 C17orf77Q96MU5 243 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 MAGT1Q9H0U3 335 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 PRR13Q9NZ81 148 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 SLC45A2Q9UMX9 530 aa9.57□□□□□ -0.88
SS18-204ENST00000539244 IGKV1OR2-108A0A075B7D4 117 aa9.56□□□□□ -0.88
SS18-204ENST00000539244 LYRM9A8MSI8 78 aa9.56□□□□□ -0.88
SS18-204ENST00000539244 CFDP00746 253 aaPredicted RBP9.56□□□□□ -0.88
SS18-204ENST00000539244 GSG1LQ6UXU4 331 aa9.56□□□□□ -0.88
SS18-204ENST00000539244 CLVS1Q8IUQ0 354 aaPredicted RBP9.56□□□□□ -0.88
SS18-204ENST00000539244 THAP8Q8NA92 274 aa9.56□□□□□ -0.88
SS18-204ENST00000539244 SCGB3A2Q96PL1 93 aa9.56□□□□□ -0.88
SS18-204ENST00000539244 RABL2AQ9UBK7 228 aaPredicted RBP9.56□□□□□ -0.88
SS18-204ENST00000539244 RABL2BQ9UNT1 228 aa9.56□□□□□ -0.88
SS18-204ENST00000539244 TMED3Q9Y3Q3 217 aa9.56□□□□□ -0.88
SS18-204ENST00000539244 ANKRD20A5PA0PJZ0 165 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 CTDSP2O14595 271 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 RGS5O15539 181 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 PITX3O75364 302 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 TSPOP30536 169 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 GALR1P47211 349 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 SRPXP78539 464 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 TNP2Q05952 138 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 OR2F1Q13607 317 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 PPP1R14BQ96C90 147 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 C16orf92Q96LL3 132 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 SLC25A32Q9H2D1 315 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 SCP2D1Q9UJQ7 156 aa9.55□□□□□ -0.88
SS18-204ENST00000539244 PIGBOS1A0A0B4J2F0 54 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 NBDYA0A0U1RRE5 68 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 ZNF98A6NK75 572 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 C16orf90A8MZG2 172 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 CRXO43186 299 aaPredicted RBP9.54□□□□□ -0.88
SS18-204ENST00000539244 AKR1C4P17516 323 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 B2MP61769 119 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 RAB11AP62491 216 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 GGNBP1Q5YKI7 109 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 OR11H7Q8NGC8 314 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 OR4D5Q8NGN0 318 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 OR1S1Q8NH92 325 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 ZNRF2Q8NHG8 242 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 TMEM208Q9BTX3 173 aa9.54□□□□□ -0.88
SS18-204ENST00000539244 DUXBA0A1W2PPF3 345 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 PLAC8L1A1L4L8 177 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 PRSS46E5RG02 174 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 DUSP14O95147 198 aaKnown RBP9.53□□□□□ -0.88
SS18-204ENST00000539244 SMIM18P0DKX4 95 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 ANXA3P12429 323 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 CNN1P51911 297 aaKnown RBP9.53□□□□□ -0.88
SS18-204ENST00000539244 IL18Q14116 193 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 C6orf223Q8N319 242 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 OR1B1Q8NGR6 318 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 GPR82Q96P67 336 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 ATG101Q9BSB4 218 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 RSG1Q9BU20 258 aa9.53□□□□□ -0.88
SS18-204ENST00000539244 ZNF705GA8MUZ8 300 aaPredicted RBP9.52□□□□□ -0.89
SS18-204ENST00000539244 INSP01308 110 aa9.52□□□□□ -0.89
SS18-204ENST00000539244 SLC25A6P12236 298 aa9.52□□□□□ -0.89
SS18-204ENST00000539244 SPINK13Q1W4C9 94 aa9.52□□□□□ -0.89
SS18-204ENST00000539244 DIRAS2Q96HU8 199 aa9.52□□□□□ -0.89
SS18-204ENST00000539244 SLC25A22Q9H936 323 aa9.52□□□□□ -0.89
SS18-204ENST00000539244 APOBP04114 4563 aaKnown RBP9.51□□□□□ -0.89
SS18-204ENST00000539244 M0R2Z0 102 aa9.51□□□□□ -0.89
SS18-204ENST00000539244 PRM2P04554 102 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms