RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 FKBP11Q9NYL4 201 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 DOK5Q9P104 306 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 LY96Q9Y6Y9 160 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 SOCS3O14543 225 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 BUB3O43684 328 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 GSTZ1O43708 216 aaPredicted RBP4.29□□□□□ -1.72
CD44-237ENST00000534082 UCHL1P09936 223 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 RPL37AP61513 92 aaKnown RBP4.29□□□□□ -1.72
CD44-237ENST00000534082 ERHP84090 104 aaKnown RBP4.29□□□□□ -1.72
CD44-237ENST00000534082 PRCDQ00LT1 54 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 DNAL1Q4LDG9 190 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 KRTAP5-3Q6L8H2 238 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 CMTM1Q8IZ96 169 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 LINC00612Q8N6U2 182 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 OR4X1Q8NH49 305 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 DAZAP1Q96EP5 407 aaKnown RBP4.29□□□□□ -1.72
CD44-237ENST00000534082 TMEM80Q96HE8 168 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 VSIG2Q96IQ7 327 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 SLC5A7Q9GZV3 580 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 C11orf21Q9P2W6 132 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 RAB22AQ9UL26 194 aa4.29□□□□□ -1.72
CD44-237ENST00000534082 AK6Q9Y3D8 172 aaKnown RBP4.29□□□□□ -1.72
CD44-237ENST00000534082 TRAV12-2A0A075B6T6 113 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 LOC100130705A0A1B0GUX0 176 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 GAGE12BA1L429 117 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 EFCAB10A6NFE3 127 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 K7EP13 123 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 CORTO00230 105 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 MYL12BO14950 172 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 GYG2O15488 501 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 GAGE7O76087 117 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 SNAPINO95295 136 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 PPYP01298 95 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 IGLV2-8P01709 118 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 RLN1P04808 185 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 IL4P05112 153 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 GAGE12FP0CL80 117 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 GAGE12GP0CL81 117 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 GAGE12IP0CL82 117 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 HTN1P15515 57 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 ELK1P19419 428 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 EVI2AP22794 236 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 F2RP25116 425 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 FCGR2CP31995 323 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 OPRK1P41145 380 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 WNT4P56705 351 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 TAS2R60P59551 318 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 FXYD4P59646 89 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 TBCEQ15813 527 aaPredicted RBP4.28□□□□□ -1.72
CD44-237ENST00000534082 SPINK9Q5DT21 86 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 HACD4Q5VWC8 232 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 SFXN4Q6P4A7 337 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 ZNF818PQ6ZRF7 136 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 TMEM144Q7Z5S9 345 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 MS4A15Q8N5U1 240 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 SLC24A4Q8NFF2 622 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 OR11H7Q8NGC8 314 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 CIRBP-AS1Q8TBR5 109 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 RNASE8Q8TDE3 154 aaKnown RBP4.28□□□□□ -1.72
CD44-237ENST00000534082 Q8WTZ3 238 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 TMEM263Q8WUH6 116 aaKnown RBP4.28□□□□□ -1.72
CD44-237ENST00000534082 NUDCD2Q8WVJ2 157 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 FCAMRQ8WWV6 532 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 LINC01587Q99440 93 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 SPXQ9BT56 116 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 CHAC1Q9BUX1 264 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 RPRMQ9NS64 109 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 KLK11Q9UBX7 282 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 ANXA10Q9UJ72 324 aa4.28□□□□□ -1.72
CD44-237ENST00000534082 TRAV30A0A087WSZ9 112 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 XKRY2A2RUG3 117 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 ISLRO14498 428 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 SSX5O60225 188 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 IGLC1P0CG04 106 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 HSMCR30P0CW71 290 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 PTHLHP12272 177 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 TAGLN2P37802 199 aaKnown RBP4.27□□□□□ -1.73
CD44-237ENST00000534082 SNCAP37840 140 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 LPAR6P43657 344 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 CNN1P51911 297 aaKnown RBP4.27□□□□□ -1.73
CD44-237ENST00000534082 DHODHQ02127 395 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 ARL6IP1Q15041 203 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 LINC01620Q4KN68 170 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 SAPCD1Q5SSQ6 148 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 HES5Q5TA89 166 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 ZNF493Q6ZR52 646 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 GPR141Q7Z602 305 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 TMEM17Q86X19 198 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 WFDC10BQ8IUB3 73 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 TMEM256Q8N2U0 113 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 LRTM2Q8N967 370 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 TSPAN14Q8NG11 270 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 OR1S2Q8NGQ3 325 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 OR4A16Q8NH70 328 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 DNAJC4Q9NNZ3 241 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 DAPK2Q9UIK4 370 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 ICOSQ9Y6W8 199 aa4.27□□□□□ -1.73
CD44-237ENST00000534082 ZNF98A6NK75 572 aa4.26□□□□□ -1.73
CD44-237ENST00000534082 RLN2P04090 185 aa4.26□□□□□ -1.73
CD44-237ENST00000534082 CRYGDP07320 174 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms