RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 FABP1P07148 127 aa8.14□□□□□ -1.11
VPS28-214ENST00000531032 ZNF705DP0CH99 300 aaPredicted RBP8.14□□□□□ -1.11
VPS28-214ENST00000531032 ZNF705BP0CI00 300 aaPredicted RBP8.14□□□□□ -1.11
VPS28-214ENST00000531032 ATP5IP56385 69 aaPredicted RBP8.14□□□□□ -1.11
VPS28-214ENST00000531032 RPP30P78346 268 aaKnown RBP8.14□□□□□ -1.11
VPS28-214ENST00000531032 BAK1Q16611 211 aa8.14□□□□□ -1.11
VPS28-214ENST00000531032 OR8G2PQ6IF36 304 aa8.14□□□□□ -1.11
VPS28-214ENST00000531032 LRTM2Q8N967 370 aa8.14□□□□□ -1.11
VPS28-214ENST00000531032 OR51G1Q8NGK1 321 aa8.14□□□□□ -1.11
VPS28-214ENST00000531032 C7orf50Q9BRJ6 194 aaKnown RBP8.14□□□□□ -1.11
VPS28-214ENST00000531032 NDUFAF3Q9BU61 184 aa8.14□□□□□ -1.11
VPS28-214ENST00000531032 IGKV1D-37A0A075B6S9 117 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 A0A1B0GVY2 172 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 SMIM9A6NGZ8 99 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 NDUFB6O95139 128 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 IFNA21P01568 189 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 P0DMU3 169 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 FAM231AP0DMU4 169 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 FAM231CP0DMU5 169 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 SLC25A6P12236 298 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 C4orf46Q504U0 113 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 GDF5OSQ5U4N7 250 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 GGNBP1Q5YKI7 109 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 POM121L12Q8N7R1 296 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 CLUHP3Q96NS8 147 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 SDHCQ99643 169 aaPredicted RBP8.13□□□□□ -1.11
VPS28-214ENST00000531032 PBDC1Q9BVG4 233 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 SCRT1Q9BWW7 348 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 WDR12Q9GZL7 423 aaKnown RBP8.13□□□□□ -1.11
VPS28-214ENST00000531032 PFDN2Q9UHV9 154 aa8.13□□□□□ -1.11
VPS28-214ENST00000531032 TMEM189A5PLL7 270 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 SOCS3O14543 225 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 IL7P13232 177 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 GPX4P36969 197 aaPredicted RBP8.12□□□□□ -1.11
VPS28-214ENST00000531032 PSMB3P49720 205 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 ZNF90Q03938 601 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 GAMTQ14353 236 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 C1orf194Q5T5A4 169 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 FOXI2Q6ZQN5 318 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 ZNF709Q8N972 641 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 PPP1R14BQ96C90 147 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 MAGT1Q9H0U3 335 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 SAV1Q9H4B6 383 aaPredicted RBP8.12□□□□□ -1.11
VPS28-214ENST00000531032 PTTG2Q9NZH5 202 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 PCLOQ9Y6V0 5065 aa8.12□□□□□ -1.11
VPS28-214ENST00000531032 C9orf170A2RU37 121 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 SYNGR2O43760 224 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 PITX3O75364 302 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 OR4E1P0C645 316 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 SPART-AS1P0CW21 52 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 ID1P41134 155 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 DEFB1P60022 68 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 LYZP61626 148 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 SPANXN5Q5MJ07 72 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 FLVCR2Q9UPI3 526 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 FAT2Q9NYQ8 4349 aa8.11□□□□□ -1.11
VPS28-214ENST00000531032 TEX48A0A1B0GUV7 120 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 H3BP45 60 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 RTL8CO15255 209 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 ADAP1O75689 374 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 SCGB1D2O95969 90 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 IGKV3-20P01619 116 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 ANXA7P20073 488 aaKnown RBP8.1□□□□□ -1.11
VPS28-214ENST00000531032 PAX9P55771 341 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 FXYD7P58549 80 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 AKR1C1Q04828 323 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 SPATA31B1PQ5VZV4 182 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 FAM210BQ96KR6 192 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 LINC00052Q96N35 136 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 TRGV9Q99603 122 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 DKK2Q9UBU2 259 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 STRAPQ9Y3F4 350 aaKnown RBP8.1□□□□□ -1.11
VPS28-214ENST00000531032 RFNGQ9Y644 331 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 DNAH2Q9P225 4427 aa8.1□□□□□ -1.11
VPS28-214ENST00000531032 IGHV3OR16-12A0A075B7B8 117 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 SMCO3A2RU48 225 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 SNRPGP15A8MWD9 76 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 ISLRO14498 428 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 LYRM1O43325 122 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 SSSCA1O60232 199 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 EMP1P54849 157 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 OR2F1Q13607 317 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 LGALS9BQ3B8N2 356 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 SLC35B3Q9H1N7 401 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 C20orf85Q9H1P6 137 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 PKHD1P08F94 4074 aa8.09□□□□□ -1.11
VPS28-214ENST00000531032 IGKV1OR2-108A0A075B7D4 117 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 PRSS29PA6NIE9 313 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 BTCP35070 178 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 POLR2GP62487 172 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS28-214ENST00000531032 PSG9Q00887 426 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 OXA1LQ15070 435 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 FAM222AQ5U5X8 452 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 FAM78BQ5VT40 261 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 SAMD13Q5VXD3 122 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 EBLN2Q6P2I7 272 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 ACOT7LQ6ZUV0 252 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 OR8I2Q8N0Y5 310 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 THAP8Q8NA92 274 aa8.08□□□□□ -1.12
VPS28-214ENST00000531032 OR4B1Q8NGF8 309 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms