RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 C1RLQ9NZP8 487 aa11.42□□□□□ -0.58
USP48-213ENST00000529637 NCR2O95944 276 aa11.42□□□□□ -0.58
USP48-213ENST00000529637 PRB4P10163 310 aaPredicted RBP11.42□□□□□ -0.58
USP48-213ENST00000529637 HIST1H1AQ02539 215 aaPredicted RBP11.42□□□□□ -0.58
USP48-213ENST00000529637 PATE2Q6UY27 113 aa11.42□□□□□ -0.58
USP48-213ENST00000529637 DSCAML1Q8TD84 2053 aa11.42□□□□□ -0.58
USP48-213ENST00000529637 TANC2Q9HCD6 1990 aa11.42□□□□□ -0.58
USP48-213ENST00000529637 TEX50A0A1B0GTY4 177 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 H3BTX0 84 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 HIST1H1EP10412 219 aaKnown RBP11.41□□□□□ -0.58
USP48-213ENST00000529637 TNFRSF1AP19438 455 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 Q6ZS92 163 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 BLNKQ8WV28 456 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 SPOCK3Q9BQ16 436 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 PAXXQ9BUH6 204 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 TMUB1Q9BVT8 246 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 CEACAM4O75871 244 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 GATA4P43694 442 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 ARF6P62330 175 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 PRCDQ00LT1 54 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 RBMXL3Q8N7X1 1067 aaKnown RBP11.41□□□□□ -0.58
USP48-213ENST00000529637 PRRG2O14669 202 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 TMEM116Q8NCL8 245 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 SMIM12Q96EX1 92 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 MAP1LC3CQ9BXW4 147 aa11.41□□□□□ -0.58
USP48-213ENST00000529637 E7EUB6 86 aa11.4□□□□□ -0.58
USP48-213ENST00000529637 C16orf97H3BN30 126 aa11.4□□□□□ -0.58
USP48-213ENST00000529637 MOSP00540 346 aa11.4□□□□□ -0.58
USP48-213ENST00000529637 C10orf55Q5SWW7 151 aa11.4□□□□□ -0.58
USP48-213ENST00000529637 UFSP1Q6NVU6 142 aa11.4□□□□□ -0.58
USP48-213ENST00000529637 SLC25A48Q6ZT89 311 aaKnown RBP11.4□□□□□ -0.58
USP48-213ENST00000529637 HILPDAQ9Y5L2 63 aa11.4□□□□□ -0.58
USP48-213ENST00000529637 ENSAO43768 121 aaKnown RBP11.4□□□□□ -0.58
USP48-213ENST00000529637 RNASE2P10153 161 aaKnown RBP11.4□□□□□ -0.58
USP48-213ENST00000529637 ERHP84090 104 aaKnown RBP11.4□□□□□ -0.58
USP48-213ENST00000529637 FAM222BQ8WU58 562 aa11.4□□□□□ -0.58
USP48-213ENST00000529637 CHCHD1Q96BP2 118 aaKnown RBP11.4□□□□□ -0.58
USP48-213ENST00000529637 NBEAP1P0C6P0 100 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 APELAP0DMC3 54 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 ATP5L2Q7Z4Y8 100 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 FXYD5Q96DB9 178 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 ZNF714Q96N38 554 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 ZNF430Q9H8G1 570 aaPredicted RBP11.39□□□□□ -0.59
USP48-213ENST00000529637 RAI1Q7Z5J4 1906 aaPredicted RBP11.39□□□□□ -0.59
USP48-213ENST00000529637 FNDC10F2Z333 226 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 H3BUT2 72 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 HTR1DP28221 377 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 PRB3Q04118 309 aaPredicted RBP11.39□□□□□ -0.59
USP48-213ENST00000529637 CD69Q07108 199 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 BSPH1Q075Z2 132 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 FAM57AQ8TBR7 257 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 FLYWCH2Q96CP2 140 aaKnown RBP11.39□□□□□ -0.59
USP48-213ENST00000529637 MALRD1Q5VYJ5 2156 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 IGHV3-72A0A0B4J1Y9 119 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 HLA-DRB1P01911 266 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 DYNLRB1Q9NP97 96 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 MRPL36Q9P0J6 103 aaKnown RBP11.39□□□□□ -0.59
USP48-213ENST00000529637 LINC00312Q9Y6C7 94 aa11.39□□□□□ -0.59
USP48-213ENST00000529637 G3V4G9 280 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 TM4SF5O14894 197 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 COX7A2P2O60397 106 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 COX8AP10176 69 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 DIAPH2-AS1Q14236 149 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 TMEM97Q5BJF2 176 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 RUSC1-AS1Q66K80 236 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 IGFL3Q6UXB1 125 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 RPP21Q9H633 154 aaKnown RBP11.38□□□□□ -0.59
USP48-213ENST00000529637 C17orf100A8MU93 164 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 SLC25A5P05141 298 aaKnown RBP11.38□□□□□ -0.59
USP48-213ENST00000529637 LIPFP07098 398 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 PET117Q6UWS5 81 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 BPIFA4PQ86YQ2 179 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 C19orf24Q9BVV8 132 aa11.38□□□□□ -0.59
USP48-213ENST00000529637 PPIAL4EA0A075B759 164 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 PGPA6NDG6 321 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 NDUFB3O43676 98 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 FSTL3O95633 263 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 PPIAL4FP0DN26 164 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 ADIPOQQ15848 244 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 TMEM177Q53S58 311 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 C10orf113Q5VZT2 155 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 C5orf17Q8NAS9 161 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 OR1L8Q8NGR8 309 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 NEU4Q8WWR8 484 aaPredicted RBP11.37□□□□□ -0.59
USP48-213ENST00000529637 RAB37Q96AX2 223 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 ZNF257Q9Y2Q1 563 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 FAM106CPP0CH98 169 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 PAX2Q02962 417 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 FAM106AQ4KMX7 169 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 C2orf83Q53S99 150 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 TMEM200BQ69YZ2 307 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 OR1N2Q8NGR9 330 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 ASCL2Q99929 193 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 MRPL32Q9BYC8 188 aaKnown RBP11.37□□□□□ -0.59
USP48-213ENST00000529637 EPDR1Q9UM22 224 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 A0A0G2JNJ9 132 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 LINC01545Q5VT33 79 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 GFRALQ6UXV0 394 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 NPIPB3Q92617 1050 aa11.37□□□□□ -0.59
USP48-213ENST00000529637 Q9UFV3 132 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms