RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ATP5IP56385 69 aaPredicted RBP9.35□□□□□ -0.91
CPSF1-204ENST00000529288 RNF126Q9BV68 326 aa9.35□□□□□ -0.91
CPSF1-204ENST00000529288 SCRT1Q9BWW7 348 aa9.35□□□□□ -0.91
CPSF1-204ENST00000529288 F6UB75 175 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 MED6O75586 246 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 HOXB5P09067 269 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 SPART-AS1P0CW21 52 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 EBLN2Q6P2I7 272 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 FOXI2Q6ZQN5 318 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 C16orf92Q96LL3 132 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 C7orf50Q9BRJ6 194 aaKnown RBP9.34□□□□□ -0.91
CPSF1-204ENST00000529288 NDUFAF3Q9BU61 184 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 SLC35B3Q9H1N7 401 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 SAV1Q9H4B6 383 aaPredicted RBP9.34□□□□□ -0.91
CPSF1-204ENST00000529288 SLC25A22Q9H936 323 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 AGRNO00468 2067 aa9.34□□□□□ -0.91
CPSF1-204ENST00000529288 PIGBOS1A0A0B4J2F0 54 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 DUXBA0A1W2PPF3 345 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 M0R2N4 97 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 IL7P13232 177 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 HTN3P15516 51 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 ORM2P19652 201 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 PSMB3P49720 205 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 RPP30P78346 268 aaKnown RBP9.33□□□□□ -0.92
CPSF1-204ENST00000529288 CNPY1Q3B7I2 92 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 TMEM128Q5BJH2 165 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 SPANXN5Q5MJ07 72 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 C1orf194Q5T5A4 169 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 TRGV9Q99603 122 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 SLC25A21Q9BQT8 299 aaPredicted RBP9.33□□□□□ -0.92
CPSF1-204ENST00000529288 PLA2G2EQ9NZK7 142 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 RFNGQ9Y644 331 aa9.33□□□□□ -0.92
CPSF1-204ENST00000529288 H3BP45 60 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 PLA2G10O15496 165 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 PITX3O75364 302 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 SFT2D2O95562 160 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 GATA2P23769 480 aaPredicted RBP9.32□□□□□ -0.92
CPSF1-204ENST00000529288 PSG9Q00887 426 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 FGL1Q08830 312 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 PPP1R1AQ13522 171 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 FAM78BQ5VT40 261 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 RSG1Q9BU20 258 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 GOLT1BQ9Y3E0 138 aa9.32□□□□□ -0.92
CPSF1-204ENST00000529288 SMCO3A2RU48 225 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 TMEM189A5PLL7 270 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 SMIM9A6NGZ8 99 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 SOCS3O14543 225 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 SYNGR2O43760 224 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 NDUFB6O95139 128 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 AMBPP02760 352 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 P0DMU3 169 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 FAM231AP0DMU4 169 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 FAM231CP0DMU5 169 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 GALR1P47211 349 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 AKR1C1Q04828 323 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 GGNBP1Q5YKI7 109 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 TRIQKQ629K1 86 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 ZNF705AQ6ZN79 300 aaPredicted RBP9.31□□□□□ -0.92
CPSF1-204ENST00000529288 LINC00299Q6ZSB3 139 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 UBE2DNLQ8IWF7 75 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 LRTM2Q8N967 370 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 OR1B1Q8NGR6 318 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 C20orf173Q96LM9 149 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 CIB3Q96Q77 187 aaPredicted RBP9.31□□□□□ -0.92
CPSF1-204ENST00000529288 NEU1Q99519 415 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 TMEM208Q9BTX3 173 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 SLC25A32Q9H2D1 315 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 RPRMQ9NS64 109 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 FLVCR2Q9UPI3 526 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 TMED3Q9Y3Q3 217 aa9.31□□□□□ -0.92
CPSF1-204ENST00000529288 IGKV1OR2-108A0A075B7D4 117 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 NAP1L6A6NFF2 107 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 ZNF705FA8MVS1 300 aaPredicted RBP9.3□□□□□ -0.92
CPSF1-204ENST00000529288 ISLRO14498 428 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 HBE1P02100 147 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 ZNF705DP0CH99 300 aaPredicted RBP9.3□□□□□ -0.92
CPSF1-204ENST00000529288 ZNF705BP0CI00 300 aaPredicted RBP9.3□□□□□ -0.92
CPSF1-204ENST00000529288 INPP1P49441 399 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 FAM222AQ5U5X8 452 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 SPATA31B1PQ5VZV4 182 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 POM121L12Q8N7R1 296 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 ZNF709Q8N972 641 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 THAP8Q8NA92 274 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 BPIFCQ8NFQ6 507 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 NIPSNAP3BQ9BS92 247 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 TMEM147Q9BVK8 224 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 DOK5Q9P104 306 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 STRAPQ9Y3F4 350 aaKnown RBP9.3□□□□□ -0.92
CPSF1-204ENST00000529288 DNAH6Q9C0G6 4158 aa9.3□□□□□ -0.92
CPSF1-204ENST00000529288 A0A0J9YX75 114 aa9.29□□□□□ -0.92
CPSF1-204ENST00000529288 LOC102723971A0A1B0GUV8 181 aa9.29□□□□□ -0.92
CPSF1-204ENST00000529288 LINC00854A0A1B0GVQ3 168 aa9.29□□□□□ -0.92
CPSF1-204ENST00000529288 ZNF98A6NK75 572 aa9.29□□□□□ -0.92
CPSF1-204ENST00000529288 CFDP00746 253 aaPredicted RBP9.29□□□□□ -0.92
CPSF1-204ENST00000529288 IFNA21P01568 189 aa9.29□□□□□ -0.92
CPSF1-204ENST00000529288 SLC25A6P12236 298 aa9.29□□□□□ -0.92
CPSF1-204ENST00000529288 MEOX2P50222 304 aa9.29□□□□□ -0.92
CPSF1-204ENST00000529288 IGFL4Q6B9Z1 124 aa9.29□□□□□ -0.92
CPSF1-204ENST00000529288 TMEM182Q6ZP80 229 aaPredicted RBP9.29□□□□□ -0.92
CPSF1-204ENST00000529288 DKK2Q9UBU2 259 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms