RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 LINC01548A6NM66 108 aa14.77□□□□□ -0.04
VPS28-207ENST00000526977 IGF1P05019 195 aa14.77□□□□□ -0.04
VPS28-207ENST00000526977 UNQ5815/PRO19632Q6UWF5 114 aa14.77□□□□□ -0.04
VPS28-207ENST00000526977 OR1B1Q8NGR6 318 aa14.77□□□□□ -0.04
VPS28-207ENST00000526977 C11orf52Q96A22 123 aa14.77□□□□□ -0.04
VPS28-207ENST00000526977 FANCD2OSQ96PS1 177 aa14.77□□□□□ -0.04
VPS28-207ENST00000526977 PRELID1Q9Y255 219 aa14.77□□□□□ -0.04
VPS28-207ENST00000526977 PLP1P60201 277 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 LINC01551Q86U37 167 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 HIVEP2P31629 2446 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 TRBV20OR9-2A0A075B6H5 130 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 TGIF2-C20orf24A0A0A6YYL0 155 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 HYPMO75409 117 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 PSG1P11464 419 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 TIGITQ495A1 244 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 PAXXQ9BUH6 204 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 BIN3Q9NQY0 253 aa14.76□□□□□ -0.05
VPS28-207ENST00000526977 IGLV11-55A0A075B6I3 123 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 A0A1W2PRE2 83 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 IGKV1-17P01599 117 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 PYYP10082 97 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 NPFFR1Q9GZQ6 430 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 OR51M1Q9H341 326 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 ECSCRQ19T08 205 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 C1QL4Q86Z23 238 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 OR5T1Q8NG75 326 aa14.75□□□□□ -0.05
VPS28-207ENST00000526977 FAM110DQ8TAY7 271 aaPredicted RBP14.75□□□□□ -0.05
VPS28-207ENST00000526977 AURKAIP1Q9NWT8 199 aaPredicted RBP14.75□□□□□ -0.05
VPS28-207ENST00000526977 TRAV41A0A0B4J266 112 aa14.74□□□□□ -0.05
VPS28-207ENST00000526977 PGPEP1LA6NFU8 196 aa14.74□□□□□ -0.05
VPS28-207ENST00000526977 GGTLC3B5MD39 225 aa14.74□□□□□ -0.05
VPS28-207ENST00000526977 AP4M1O00189 453 aa14.74□□□□□ -0.05
VPS28-207ENST00000526977 SUMO1P63165 101 aaKnown RBP14.74□□□□□ -0.05
VPS28-207ENST00000526977 UBE2L3P68036 154 aaKnown RBP14.74□□□□□ -0.05
VPS28-207ENST00000526977 PRSS22Q9GZN4 317 aa14.74□□□□□ -0.05
VPS28-207ENST00000526977 THYN1Q9P016 225 aa14.74□□□□□ -0.05
VPS28-207ENST00000526977 ZNF580Q9UK33 172 aa14.74□□□□□ -0.05
VPS28-207ENST00000526977 CRYBB3P26998 211 aa14.73□□□□□ -0.05
VPS28-207ENST00000526977 RPS10P46783 165 aaKnown RBP14.73□□□□□ -0.05
VPS28-207ENST00000526977 ZNF418Q8TF45 676 aaPredicted RBP14.73□□□□□ -0.05
VPS28-207ENST00000526977 FXYD5Q96DB9 178 aa14.73□□□□□ -0.05
VPS28-207ENST00000526977 G3V318 75 aa14.73□□□□□ -0.05
VPS28-207ENST00000526977 RD3LP0DJH9 198 aa14.73□□□□□ -0.05
VPS28-207ENST00000526977 HIST1H1BP16401 226 aaKnown RBP14.73□□□□□ -0.05
VPS28-207ENST00000526977 OCC1Q8TAD7 63 aa14.73□□□□□ -0.05
VPS28-207ENST00000526977 ANAPC16Q96DE5 110 aa14.73□□□□□ -0.05
VPS28-207ENST00000526977 PFN1P07737 140 aaKnown RBP14.72□□□□□ -0.05
VPS28-207ENST00000526977 KLK9Q2XQG4 91 aa14.72□□□□□ -0.05
VPS28-207ENST00000526977 Q6ZS46 218 aa14.72□□□□□ -0.05
VPS28-207ENST00000526977 DUX5Q96PT3 197 aa14.72□□□□□ -0.05
VPS28-207ENST00000526977 KLK9Q9UKQ9 250 aa14.72□□□□□ -0.05
VPS28-207ENST00000526977 DNAJC9-AS1A6NH13 148 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 H7BYZ3 331 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 RPL35P42766 123 aaKnown RBP14.71□□□□□ -0.05
VPS28-207ENST00000526977 C19orf54Q5BKX5 351 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 STXBP6Q8NFX7 210 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 S4R3C0 116 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 HIVEP1P15822 2718 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 NDUFB8O95169 186 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 LYZP61626 148 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 Q71RC1 249 aaPredicted RBP14.71□□□□□ -0.05
VPS28-207ENST00000526977 ELOVL1Q9BW60 279 aa14.71□□□□□ -0.05
VPS28-207ENST00000526977 SETXQ7Z333 2677 aaKnown RBP14.7□□□□□ -0.06
VPS28-207ENST00000526977 TRBV24-1A0A075B6N3 115 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 HELTA6NFD8 242 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 INAFM1C9JVW0 142 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 MFAP4P55083 255 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 SNRPEP62304 92 aaKnown RBP14.7□□□□□ -0.06
VPS28-207ENST00000526977 MRPL27Q9P0M9 148 aaKnown RBP14.7□□□□□ -0.06
VPS28-207ENST00000526977 HIGD1AQ9Y241 93 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 C5orf52A6NGY3 159 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 C9JCJ5 164 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 FABP1P07148 127 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 SNRPCP09234 159 aaKnown RBP14.7□□□□□ -0.06
VPS28-207ENST00000526977 NECAP1Q8NC96 275 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 FAM210BQ96KR6 192 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 LINC00527Q9UJ94 153 aa14.7□□□□□ -0.06
VPS28-207ENST00000526977 F8W735 103 aaPredicted RBP14.69□□□□□ -0.06
VPS28-207ENST00000526977 BRI3O95415 125 aa14.69□□□□□ -0.06
VPS28-207ENST00000526977 GALR1P47211 349 aa14.69□□□□□ -0.06
VPS28-207ENST00000526977 LEMD1Q68G75 181 aa14.69□□□□□ -0.06
VPS28-207ENST00000526977 JMJD8Q96S16 334 aa14.69□□□□□ -0.06
VPS28-207ENST00000526977 ESM1Q9NQ30 184 aa14.69□□□□□ -0.06
VPS28-207ENST00000526977 ANK3Q12955 4377 aaKnown RBP14.69□□□□□ -0.06
VPS28-207ENST00000526977 TRAV30A0A087WSZ9 112 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 TRBV9A0A0B4J1U6 114 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 OR2J3O76001 311 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 TOMM40O96008 361 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 PPIFP30405 207 aaKnown RBP14.68□□□□□ -0.06
VPS28-207ENST00000526977 HILS1P60008 231 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 RPL15P61313 204 aaKnown RBP14.68□□□□□ -0.06
VPS28-207ENST00000526977 Q8N2B8 174 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 NOL4LQ96MY1 436 aaPredicted RBP14.68□□□□□ -0.06
VPS28-207ENST00000526977 SLC25A39Q9BZJ4 359 aaPredicted RBP14.68□□□□□ -0.06
VPS28-207ENST00000526977 ZNF702PQ9H963 129 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 C21orf62Q9NYP8 219 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 LY96Q9Y6Y9 160 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 H3BUA1 57 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 GNG7O60262 68 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 ZNF329Q86UD4 541 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms