RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 PSG1P11464 419 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 FGF7P21781 194 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 CRYBB3P26998 211 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 GALR1P47211 349 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 EGFEM1PQ0D2K5 195 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 OR2F1Q13607 317 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 CLINT1Q14677 625 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 BEAN1Q3B7T3 259 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 BTNL8Q6UX41 500 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 UNQ9165/PRO28630Q6UXU0 137 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 AKAP14Q86UN6 197 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 CHAC2Q8WUX2 184 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 KRTAP4-12Q9BQ66 201 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 RHPN1-AS1Q9BWJ2 59 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 PARD6GQ9BYG4 376 aaPredicted RBP5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 SMPXQ9UHP9 88 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 HIGD1AQ9Y241 93 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 WDR83OSQ9Y284 106 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 DNASE2O00115 360 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 TSPAN4O14817 238 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 AGPAT2O15120 278 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 GP9P14770 177 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 RPL7P18124 248 aaKnown RBP5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 RPL29P47914 159 aaKnown RBP5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 PLP1P60201 277 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 B2MP61769 119 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 RPL11P62913 178 aaKnown RBP5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 ZNF345Q14585 488 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 GUCA2BQ16661 112 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 TM4SF20Q53R12 229 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 Q6ZNX1 250 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 OR1B1Q8NGR6 318 aa5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 WDR89Q96FK6 387 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 LSM4Q9Y4Z0 139 aaKnown RBP5.88□□□□□ -1.47
LIMCH1-222ENST00000515847 A0A0D9SG52 128 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 KANTRA0A1W2PQU2 76 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 WI2-2373I1.2A0A1W2PRP0 233 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 H0YIZ8 118 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 CHEK1O14757 476 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 JTBO76095 146 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 MBP02144 154 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 OR5G3P0C626 314 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 ORM2P19652 201 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 ID1P41134 155 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 TAS2R45P59539 299 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 SNRPD3P62318 126 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 DEFA6Q01524 100 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 ZNF90Q03938 601 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 OPCMLQ14982 345 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 MLANAQ16655 118 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 DEFB114Q30KQ6 69 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 CD300EQ496F6 205 aaPredicted RBP5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 TCF24Q7RTU0 167 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 TCTE3Q8IZS6 198 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 OR8I2Q8N0Y5 310 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 GATAD1Q8WUU5 269 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 GNPNAT1Q96EK6 184 aaPredicted RBP5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 FAM110AQ9BQ89 295 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 GGTLC1Q9BX51 225 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 NPCDR1Q9BY65 106 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 WDR61Q9GZS3 305 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 MFFQ9GZY8 342 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 VSIRQ9H7M9 311 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 SEPSECSQ9HD40 501 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 MRPL36Q9P0J6 103 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 TNFSF18Q9UNG2 199 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 TMA7Q9Y2S6 64 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 TIMM9Q9Y5J7 89 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 PXMP4Q9Y6I8 212 aa5.87□□□□□ -1.47
LIMCH1-222ENST00000515847 IGKV1D-37A0A075B6S9 117 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 HMSDA8MTL9 139 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 ARPC5O15511 151 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 ZNF207O43670 478 aaKnown RBP5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 PFDN1O60925 122 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 PRB2P02812 416 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 ATF4P18848 351 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 CXCL2P19875 107 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 KRTAP10-11P60412 298 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 NHLH2Q02577 135 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 USF2Q15853 346 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 ACOT6Q3I5F7 207 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 C10orf113Q5VZT2 155 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 EIF5AL1Q6IS14 154 aaKnown RBP5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 SIGLEC15Q6ZMC9 328 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 IL34Q6ZMJ4 242 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 HAPLN4Q86UW8 402 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 BPIFA4PQ86YQ2 179 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 TMEM61Q8N0U2 210 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 STXBP6Q8NFX7 210 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 MGST2Q99735 147 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 RNF126Q9BV68 326 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 MRPL32Q9BYC8 188 aaKnown RBP5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 ARL6Q9H0F7 186 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 ARV1Q9H2C2 271 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 NRN1Q9NPD7 142 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 SLC39A9Q9NUM3 307 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 CLEC5AQ9NY25 188 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 MLXQ9UH92 298 aa5.86□□□□□ -1.47
LIMCH1-222ENST00000515847 IGKV1OR2-108A0A075B7D4 117 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 IGHV3OR16-8A0A075B7F1 116 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms