RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CCDC168Q8NDH2 2452 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 A6NNC1 897 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 CEACAM4O75871 244 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 IGHG3P01860 377 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 TMEM167AQ8TBQ9 72 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 NDUFS6O75380 124 aaKnown RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 SNRPD3P62318 126 aaKnown RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 Q6ZR03 302 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 NEUROG1Q92886 237 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 MBD3L4A6NDZ8 208 aaPredicted RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 MBD3L3A6NE82 208 aaPredicted RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 MBD3L5A6NJ08 208 aaPredicted RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 H0YJW9 148 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 LGALS3P17931 250 aaKnown RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 ASIPP42127 132 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 LURAP1LQ8IV03 231 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 MBD3L2Q8NHZ7 208 aaPredicted RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 SCGB3A1Q96QR1 104 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 CCL19Q99731 98 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 VKORC1Q9BQB6 163 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 RPL15P61313 204 aaKnown RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 AMMECR1LQ6DCA0 310 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 SLC25A48Q6ZT89 311 aaKnown RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 SMIM12Q96EX1 92 aa10.36□□□□□ -0.75
USP53-209ENST00000514665 BEX4Q9NWD9 120 aaPredicted RBP10.36□□□□□ -0.75
USP53-209ENST00000514665 A0A0G2JNJ9 132 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 CACNG7P62955 275 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 ADIPOQQ15848 244 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 TTC9CQ8N5M4 171 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 FAM168AQ92567 244 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 Q9UFV3 132 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 PIEZO1Q92508 2521 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 IGHV1-3A0A0C4DH29 117 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 RNASE2P10153 161 aaKnown RBP10.35□□□□□ -0.75
USP53-209ENST00000514665 LY6DQ14210 128 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 ARHGAP21Q5T5U3 1957 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 IGKV3OR2-268A0A0C4DH90 116 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 ATP5LO75964 103 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 SMIM13P0DJ93 91 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 EVI2AP22794 236 aa10.35□□□□□ -0.75
USP53-209ENST00000514665 DMRTC2Q8IXT2 367 aaPredicted RBP10.35□□□□□ -0.75
USP53-209ENST00000514665 PSMB11A5LHX3 300 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 TCRAP04437 139 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 TSPOP30536 169 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 ZNF138P52744 262 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 IL15RAQ13261 267 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 DUX5Q96PT3 197 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 ASCL2Q99929 193 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 SLC25A39Q9BZJ4 359 aaPredicted RBP10.34□□□□□ -0.75
USP53-209ENST00000514665 IGKV2-40A0A087WW87 121 aaPredicted RBP10.34□□□□□ -0.75
USP53-209ENST00000514665 TNFSF13O75888 250 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 IGKV2D-40P01614 121 aaPredicted RBP10.34□□□□□ -0.75
USP53-209ENST00000514665 PFN1P07737 140 aaKnown RBP10.34□□□□□ -0.75
USP53-209ENST00000514665 LEPP41159 167 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 ZNF726P1Q15940 193 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 ACTL10Q5JWF8 245 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 DUX4L9Q6RFH8 374 aaPredicted RBP10.34□□□□□ -0.75
USP53-209ENST00000514665 SFTA2Q6UW10 78 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 ZNF664Q8N3J9 261 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 A0A1B0GW15 77 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 NCR2O95944 276 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 THBDP07204 575 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 RNASE4P34096 147 aaKnown RBP10.34□□□□□ -0.75
USP53-209ENST00000514665 OR10J3Q5JRS4 329 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 ZNF256Q9Y2P7 627 aaPredicted RBP10.34□□□□□ -0.75
USP53-209ENST00000514665 TLN1Q9Y490 2541 aaKnown RBP10.34□□□□□ -0.75
USP53-209ENST00000514665 NDUFA3O95167 84 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 TGFAP01135 160 aa10.34□□□□□ -0.75
USP53-209ENST00000514665 NCOR2Q9Y618 2525 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 FXYD7P58549 80 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 Q6ZS92 163 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 TNFRSF14Q92956 283 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 A0A0G2JLM5 398 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 A0A1B0GWJ7 208 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 H3BUT2 72 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 COX6CP09669 75 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 C19orf54Q5BKX5 351 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 TMEM219Q86XT9 240 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 NUP35Q8NFH5 326 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 RAX2Q96IS3 184 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 APOMO95445 188 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 C3orf79P0CE67 100 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 LMO1P25800 156 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 C1orf194Q5T5A4 169 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 IGFL4Q6B9Z1 124 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 Q8TAT8 98 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 WFDC12Q8WWY7 111 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 MCRIP2Q9BUT9 160 aaKnown RBP10.33□□□□□ -0.76
USP53-209ENST00000514665 JKAMPQ9P055 326 aa10.33□□□□□ -0.76
USP53-209ENST00000514665 IGLV3-1P01715 115 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 HBDP02042 147 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 SRD5A1P18405 259 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 C15orf32Q32M92 178 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 GEMIN7Q9H840 131 aaKnown RBP10.32□□□□□ -0.76
USP53-209ENST00000514665 SIGLEC9Q9Y336 463 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 IGF2RP11717 2491 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 OTOGLQ3ZCN5 2332 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.32□□□□□ -0.76
USP53-209ENST00000514665 PLXNB1O43157 2135 aa10.32□□□□□ -0.76
USP53-209ENST00000514665 RRN3P1Q2M238 152 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms