RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 NRN1Q9NPD7 142 aa7.12□□□□□ -1.27
RNF4-221ENST00000513643 PAIP2BQ9ULR5 123 aaKnown RBP7.12□□□□□ -1.27
RNF4-221ENST00000513643 VPS13DQ5THJ4 4388 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 INMT-MINDY4F8WBC2 141 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 SPRY2O43597 315 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 ATF4P18848 351 aaPredicted RBP7.11□□□□□ -1.27
RNF4-221ENST00000513643 RPL11P62913 178 aaKnown RBP7.11□□□□□ -1.27
RNF4-221ENST00000513643 OR2F1Q13607 317 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 VWC2Q2TAL6 325 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 LEMD1Q68G75 181 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 CYP2G1PQ6ZSU1 146 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 STXBP6Q8NFX7 210 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 OR10P1Q8NGE3 313 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 ENKURQ8TC29 256 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 CHAC2Q8WUX2 184 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 LYRM2Q9NU23 88 aaPredicted RBP7.11□□□□□ -1.27
RNF4-221ENST00000513643 PFDN2Q9UHV9 154 aa7.11□□□□□ -1.27
RNF4-221ENST00000513643 ALMS1Q8TCU4 4167 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 C5orf51A6NDU8 294 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 ZNF98A6NK75 572 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 SCGB1D2O95969 90 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 ZNF688P0C7X2 276 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 RPL35AP18077 110 aaKnown RBP7.1□□□□□ -1.27
RNF4-221ENST00000513643 LYZP61626 148 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 SELENOTP62341 195 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 RAB32Q13637 225 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 GSG1LQ6UXU4 331 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 PATE2Q6UY27 113 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 CSNK1G2-AS1Q8NCQ2 148 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 BPIFCQ8NFQ6 507 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 GATAD1Q8WUU5 269 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 CLUHP3Q96NS8 147 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 PBDC1Q9BVG4 233 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 GPN1Q9HCN4 374 aaPredicted RBP7.1□□□□□ -1.27
RNF4-221ENST00000513643 FBXL17Q9UF56 701 aa7.1□□□□□ -1.27
RNF4-221ENST00000513643 FAM24AA6NFZ4 105 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 FAM25EA8MYX2 175 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 H0YIZ8 118 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 H3BRN7 92 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 MRPS12O15235 138 aaKnown RBP7.09□□□□□ -1.27
RNF4-221ENST00000513643 LINC00869P0C866 280 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 LYL1P12980 280 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 H2BFSP57053 126 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 AKR1C1Q04828 323 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 DEFB135Q30KP9 77 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 TEPPQ6URK8 271 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 TMEM252Q8N6L7 170 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 SHANK2-AS3Q9BTD1 123 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 NMES1Q9C002 83 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 WDR83OSQ9Y284 106 aa7.09□□□□□ -1.27
RNF4-221ENST00000513643 IGSF23A1L1A6 192 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 KNCNA6PVL3 124 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 A8MTW9 85 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 H3BMM0 161 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 ISLRO14498 428 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 AGPAT2O15120 278 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 SIX6O95475 246 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 SULT1A1P50225 295 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 DEFA1P59665 94 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 DEFA3P59666 94 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 RRAS2P62070 204 aaPredicted RBP7.08□□□□□ -1.28
RNF4-221ENST00000513643 PRR20EP86478 221 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 PRR20CP86479 221 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 PRR20DP86480 221 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 PRR20BP86481 221 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 PRR20AP86496 221 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 EWSR1Q01844 656 aaKnown RBP eCLIP7.08□□□□□ -1.286e-6■□□□□ 9.2
RNF4-221ENST00000513643 PSMG4Q5JS54 123 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 PXDC1Q5TGL8 231 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 OR8I2Q8N0Y5 310 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 GPR82Q96P67 336 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 MGST2Q99735 147 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 RNF126Q9BV68 326 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 SLC25A39Q9BZJ4 359 aaPredicted RBP7.08□□□□□ -1.28
RNF4-221ENST00000513643 SLC25A32Q9H2D1 315 aa7.08□□□□□ -1.28
RNF4-221ENST00000513643 LSM5Q9Y4Y9 91 aaKnown RBP7.08□□□□□ -1.28
RNF4-221ENST00000513643 ZNF705EA8MWA4 302 aaPredicted RBP7.07□□□□□ -1.28
RNF4-221ENST00000513643 L7N2F9 121 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 HYPMO75409 117 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 CST7O76096 145 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 SPP1P10451 314 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 HLA-DRB4P13762 266 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 ORM2P19652 201 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 C4BPBP20851 252 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 S100A11P31949 105 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 PSMB3P49720 205 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 SNRPD3P62318 126 aaKnown RBP7.07□□□□□ -1.28
RNF4-221ENST00000513643 VAMP2P63027 116 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 CYCSP99999 105 aaKnown RBP7.07□□□□□ -1.28
RNF4-221ENST00000513643 SLC38A11Q08AI6 406 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 TMEM41BQ5BJD5 291 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 SAMD13Q5VXD3 122 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 MORN3Q6PF18 240 aaPredicted RBP7.07□□□□□ -1.28
RNF4-221ENST00000513643 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 STHQ8IWL8 128 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 OR1B1Q8NGR6 318 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 IL17DQ8TAD2 202 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 TMEM37Q8WXS4 190 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 TMEM147Q9BVK8 224 aa7.07□□□□□ -1.28
RNF4-221ENST00000513643 SCRT1Q9BWW7 348 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 179.2 ms