RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 OR11H12B2RN74 326 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 AGPAT2O15120 278 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 GIPP09681 153 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 OR5G3P0C626 314 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 RPL12P30050 165 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 S100A7P31151 101 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 CAMLGP49069 296 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 SELENOTP62341 195 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 ATP6V1FQ16864 119 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 TMEM182Q6ZP80 229 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 SMIM3Q9BZL3 60 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 SLC25A22Q9H936 323 aa8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 LSM4Q9Y4Z0 139 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-210ENST00000509454 HELTA6NFD8 242 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 HYPMO75409 117 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 IGHV4-30-4P0DP06 118 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 RAP2BP61225 183 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 FGL1Q08830 312 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 C16orf54Q6UWD8 224 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 Q8N1Y9 231 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 DEFB125Q8N687 156 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 MGST2Q99735 147 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 ASCL2Q99929 193 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 ARL6Q9H0F7 186 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 WFDC10AQ9H1F0 79 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 MS4A6AQ9H2W1 248 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 HIGD1AQ9Y241 93 aa8.56□□□□□ -1.04
LIMCH1-210ENST00000509454 SIGLEC15Q6ZMC9 328 aa8.55□□□□□ -1.04
LIMCH1-210ENST00000509454 OR8I2Q8N0Y5 310 aa8.55□□□□□ -1.04
LIMCH1-210ENST00000509454 OR2T35Q8NGX2 323 aa8.55□□□□□ -1.04
LIMCH1-210ENST00000509454 ASB13Q8WXK3 278 aa8.55□□□□□ -1.04
LIMCH1-210ENST00000509454 SRD5A3Q9H8P0 318 aa8.55□□□□□ -1.04
LIMCH1-210ENST00000509454 WDR83OSQ9Y284 106 aa8.55□□□□□ -1.04
LIMCH1-210ENST00000509454 HSPB11Q9Y547 144 aa8.55□□□□□ -1.04
LIMCH1-210ENST00000509454 U3KQE9 123 aa8.55□□□□□ -1.04
LIMCH1-210ENST00000509454 FXYD6-FXYD2A0A087WZ82 144 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 BUB3O43684 328 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 COX7A2P2O60397 106 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 FRMD6-AS1P0C7T7 363 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 AP2S1P53680 142 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 VWC2Q2TAL6 325 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 MIC13Q5XKP0 118 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 FAM90A2PQ658T7 463 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 S100A7AQ86SG5 101 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 GLMPQ8WWB7 406 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 FBXL17Q9UF56 701 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 SLC45A2Q9UMX9 530 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 IFNA5P01569 189 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 LEMD1Q68G75 181 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 Q6ZRG5 221 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 STPG3Q8N7X2 389 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 ZNF709Q8N972 641 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 SCGB1C1Q8TD33 95 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 ATP5SQ99766 215 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 GGTLC1Q9BX51 225 aa8.54□□□□□ -1.04
LIMCH1-210ENST00000509454 ZNF98A6NK75 572 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 MPDU1O75352 247 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 GALR1P47211 349 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 CMC4P56277 68 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 B2MP61769 119 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 Q5BKY6 102 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 C1orf194Q5T5A4 169 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 PXDC1Q5TGL8 231 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 C10orf113Q5VZT2 155 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 INO80EQ8NBZ0 244 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 UHRF2Q96PU4 802 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 B9D2Q9BPU9 175 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 SCRT1Q9BWW7 348 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 SLC25A39Q9BZJ4 359 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 ARV1Q9H2C2 271 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 PXMP4Q9Y6I8 212 aa8.53□□□□□ -1.04
LIMCH1-210ENST00000509454 C17orf112F2Z3M2 114 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 H3BRN7 92 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 ZNF688P0C7X2 276 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 LYL1P12980 280 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 ATF4P18848 351 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 PLP1P60201 277 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 OPCMLQ14982 345 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 ODF3L2Q3SX64 289 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 APRG1Q8IVJ8 170 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 OR1L4Q8NGR5 311 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 SHANK2-AS3Q9BTD1 123 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 NPCDR1Q9BY65 106 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 SLC25A32Q9H2D1 315 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 NRN1Q9NPD7 142 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 SLC39A9Q9NUM3 307 aa8.52□□□□□ -1.05
LIMCH1-210ENST00000509454 DNAH3Q8TD57 4116 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 hCG_2014768A0A024R1R8 64 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 TRAV2A0A0B4J234 112 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 SMLR1H3BR10 107 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 K7EQG2 157 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 RPL29P47914 159 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 DEFB131AP59861 70 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 SNRPD3P62318 126 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 LINC00305Q7Z4B0 112 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 FAM24BQ8N5W8 94 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 CHAC2Q8WUX2 184 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 PFDN5Q99471 154 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 RSG1Q9BU20 258 aa8.51□□□□□ -1.05
LIMCH1-210ENST00000509454 WDR61Q9GZS3 305 aaKnown RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms