RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 FBLN7Q53RD9 439 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 TCTEX1D4Q5JR98 221 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 SLC25A48Q6ZT89 311 aaKnown RBP6.33□□□□□ -1.4
SCN1A-207ENST00000507401 LYG1Q8N1E2 194 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 C5orf56Q8N8D9 126 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 NUDT10Q8NFP7 164 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 LSM10Q969L4 123 aaKnown RBP6.33□□□□□ -1.4
SCN1A-207ENST00000507401 EAF1Q96JC9 268 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-207ENST00000507401 ALKBH7Q9BT30 221 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-207ENST00000507401 SLC39A9Q9NUM3 307 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 KCNIP1Q9NZI2 227 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 MRPL27Q9P0M9 148 aaKnown RBP6.33□□□□□ -1.4
SCN1A-207ENST00000507401 TRAPPC1Q9Y5R8 145 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 COX11Q9Y6N1 276 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 NOTCH3Q9UM47 2321 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 PSMB11A5LHX3 300 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 C17orf112F2Z3M2 114 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 PDCD6O75340 191 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 IGKV1D-33P01593 117 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 IGKV1-33P01594 117 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 HBZP02008 142 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF134P52741 427 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 SLC35B1P78383 322 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 RHOGP84095 191 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 KIR2DS1Q14954 304 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 MSMO1Q15800 293 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 NMSQ5H8A3 153 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 CT45A1Q5HYN5 189 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 OR10J3Q5JRS4 329 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 HIST2H2BDQ6DRA6 164 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF880Q6PDB4 577 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 MOB3BQ86TA1 216 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 Q8N6K4 173 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF439Q8NDP4 499 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 OR4C5Q8NGB2 326 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 CT45A3Q8NHU0 189 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 TMEM37Q8WXS4 190 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 BANF2Q9H503 90 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 LIN7CQ9NUP9 197 aaKnown RBP6.32□□□□□ -1.4
SCN1A-207ENST00000507401 GNG12Q9UBI6 72 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 LAMTOR2Q9Y2Q5 125 aa6.32□□□□□ -1.4
SCN1A-207ENST00000507401 FAM24AA6NFZ4 105 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 SH2D7A6NKC9 451 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-207ENST00000507401 ZFP92A6NM28 416 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 SSSCA1O60232 199 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 MOSP00540 346 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 OR5G3P0C626 314 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 PF4V1P10720 104 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 SCGB1A1P11684 91 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 HNRNPA3P51991 378 aaKnown RBP6.31□□□□□ -1.4
SCN1A-207ENST00000507401 TCF24Q7RTU0 167 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 OR1L1Q8NH94 360 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 MRPL30Q8TCC3 161 aaKnown RBP6.31□□□□□ -1.4
SCN1A-207ENST00000507401 GALMQ96C23 342 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 TXN2Q99757 166 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 RPRMQ9NS64 109 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF580Q9UK33 172 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 JPT1Q9UK76 154 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 ARL2-SNX15V9GYD0 113 aa6.31□□□□□ -1.4
SCN1A-207ENST00000507401 PRKDCP78527 4128 aaKnown RBP6.31□□□□□ -1.4
SCN1A-207ENST00000507401 IGHV3-43A0A0B4J1X8 118 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 NCBP2LA6PVI3 153 aaKnown RBP6.3□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF253O75346 499 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 NAPSAO96009 420 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 IGHV3-43DP0DP04 118 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 CRISP2P16562 243 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 BMI1P35226 326 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 CTRLP40313 264 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 REG1BP48304 166 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 SELENOHQ8IZQ5 122 aaKnown RBP6.3□□□□□ -1.4
SCN1A-207ENST00000507401 Q8N9W7 124 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 UBALD1Q8TB05 177 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 S1PR3Q99500 378 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 RASL11BQ9BPW5 248 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 GNB1LQ9BYB4 327 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 SAMD10Q9BYL1 202 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 KCNIP2Q9NS61 270 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 PRR13Q9NZ81 148 aa6.3□□□□□ -1.4
SCN1A-207ENST00000507401 TRBV6-6A0A0A6YYG2 114 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 A0A1B0GV50 99 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 A0A1W2PRX2 142 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF320A2RRD8 509 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 CBY3A6NI87 242 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 LINC01548A6NM66 108 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 RAMP3O60896 148 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 PPYP01298 95 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 IGF1P05019 195 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 IGLC2P0DOY2 106 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 IGLC3P0DOY3 106 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 MYCNOSP40205 109 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 GPR12P47775 334 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 RHOBP62745 196 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 MLANAQ16655 118 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 FAM53AQ6NSI3 398 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-207ENST00000507401 FAM71F2Q6NXP2 309 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 RASL11AQ6T310 242 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 C10orf99Q6UWK7 81 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF329Q86UD4 541 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 RNF152Q8N8N0 203 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 OR52L2PQ8NGH6 319 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms