RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 ZNF816Q0VGE8 651 aaPredicted RBP4.23□□□□□ -1.73
USP54-216ENST00000498143 C17orf82Q86X59 251 aaPredicted RBP4.23□□□□□ -1.73
USP54-216ENST00000498143 C10orf105Q8TEF2 133 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 PPDPFQ9H3Y8 114 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 PLXNB3Q9ULL4 1909 aa4.23□□□□□ -1.73
USP54-216ENST00000498143 PRSS29PA6NIE9 313 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 ATOX1O00244 68 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 IGLC2P0DOY2 106 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 IGLC3P0DOY3 106 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 LIM2P55344 173 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 CTXN1P60606 82 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 AMN1Q8IY45 258 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 DRAM1Q8N682 238 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 ADAD2Q8NCV1 583 aaKnown RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 C16orf52Q8NHV5 167 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 UBALD1Q8TB05 177 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 AMMECR1Q9Y4X0 333 aaPredicted RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 TRBV5-3A0A0A0MS03 114 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 MUC21A0A0G2JKD1 596 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 MUC21A0A140T8X8 626 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 GRIFINA4D1Z8 144 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 RNF222A6NCQ9 220 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 SPRY3O43610 288 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 NDUFB3O43676 98 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 IGLC1P0CG04 106 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 C8orf88P0DMB2 117 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 PPIFP30405 207 aaKnown RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 RHOGP84095 191 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 MUC21Q5SSG8 566 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 SLC35E4Q6ICL7 350 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 ABHD12Q8N2K0 398 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 C10orf111Q8N326 155 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 SLC22A24Q8N4F4 322 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 C8orf31Q8N9H6 132 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 GATD1Q8NB37 220 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 MDS2Q8NDY4 140 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 KIR2DL5BQ8NHK3 375 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 SIRT4Q9Y6E7 314 aaPredicted RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 IGHV4-61A0A0C4DH41 118 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 SHISA9B4DS77 424 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 ZNF737O75373 536 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 REG1AP05451 166 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 DANCRP0C864 163 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 FMODQ06828 376 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 LY6G6FQ5SQ64 297 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 OR5AS1Q8N127 324 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 DEFB125Q8N687 156 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 THAP8Q8NA92 274 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 APCDD1LQ8NCL9 501 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 OR2A1Q8NGT9 310 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 PRSS22Q9GZN4 317 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 TMEM242Q9NWH2 141 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 MRPL27Q9P0M9 148 aaKnown RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 MTCL1Q9Y4B5 1905 aaKnown RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 TRAV14DV4A0A0A6YYC5 116 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 A0A1B0GW64 132 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 A0A1B0GX51 115 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 NCBP2LA6PVI3 153 aaKnown RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 F8VVB4 439 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 F8VWA3 439 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 HYPMO75409 117 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 HMGN2P05204 90 aaKnown RBP4.22□□□□□ -1.73
USP54-216ENST00000498143 SCTP09683 121 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 CKS2P33552 79 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 RND3P61587 244 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 BTG2P78543 158 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 IL15RAQ13261 267 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 KIAA0040Q15053 153 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 C10orf91Q5T1B1 145 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 TMEM78Q5T7P6 136 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 TEX45Q8NA69 505 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 PRSS3P2Q8NHM4 247 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 METTL26Q96S19 204 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 VGLL1Q99990 258 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 NRN1Q9NPD7 142 aa4.22□□□□□ -1.73
USP54-216ENST00000498143 H3BMG7 143 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 NBR2O15453 112 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 IGHG4P01861 327 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 SYNJ2BPP57105 145 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 KIR3DS1Q14943 382 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 APRG1Q8IVJ8 170 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 RFESDQ8TAC1 157 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 SLC25A43Q8WUT9 341 aaPredicted RBP4.21□□□□□ -1.74
USP54-216ENST00000498143 KIR2DL4Q99706 377 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 TECRQ9NZ01 308 aaKnown RBP4.21□□□□□ -1.74
USP54-216ENST00000498143 MOB4Q9Y3A3 225 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 IGHV2-26A0A0B4J1V2 119 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 PGPA6NDG6 321 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 SDCBPO00560 298 aaPredicted RBP4.21□□□□□ -1.74
USP54-216ENST00000498143 GZMMP51124 257 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 HERVK_113P63121 156 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 TIAL1Q01085 375 aaKnown RBP eCLIP4.21□□□□□ -1.74
USP54-216ENST00000498143 PRELID3AQ96N28 172 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 SPACA5Q96QH8 159 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 FOXB1Q99853 325 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 TAAR3PQ9P1P4 343 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 K7N7A8 449 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 RAMP1O60894 148 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 NDUFA7O95182 113 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms