RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 GAFA1Q96PS6 74 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 MCRIP2Q9BUT9 160 aaKnown RBP7.76□□□□□ -1.17
SYNE1-230ENST00000495090 MRPL20Q9BYC9 149 aaKnown RBP7.76□□□□□ -1.17
SYNE1-230ENST00000495090 NPFFR1Q9GZQ6 430 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 TMEM14CQ9P0S9 112 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 DYSFO75923 2080 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 WDR87Q6ZQQ6 2873 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 A0A1W2PPM0 123 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 PATE3B3GLJ2 98 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 E7EUB6 86 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 H0Y8G0 127 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 H3BUT2 72 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 NCR2O95944 276 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 PLAUP00749 431 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 CT45A10P0DMU9 189 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 ZNF788Q6ZQV5 615 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 TMEM116Q8NCL8 245 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 PRSS3P2Q8NHM4 247 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 C8orf46Q8TAG6 207 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 PIFOQ8TCI5 191 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 SGK494Q96LW2 274 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 PLSCR4Q9NRQ2 329 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 MRPL36Q9P0J6 103 aaKnown RBP7.75□□□□□ -1.17
SYNE1-230ENST00000495090 RNF7Q9UBF6 113 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 LINC00312Q9Y6C7 94 aa7.75□□□□□ -1.17
SYNE1-230ENST00000495090 A0A096LNJ9 63 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 hADV38S2A0JD32 116 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 IGLV2-11P01706 119 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 ORM2P19652 201 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 FOXE3Q13461 319 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 MSMPQ1L6U9 139 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 LHFPL4Q7Z7J7 247 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 CNEP1R1Q8N9A8 125 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 RPH3ALQ9UNE2 315 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 U3KQK5 164 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 TNCP24821 2201 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 IGLV3-9A0A075B6K5 115 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 TMEM189A5PLL7 270 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 CSN3P07498 182 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 S100A7P31151 101 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 C3orf36Q3SXR2 165 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 SPRNQ5BIV9 151 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 PRR31Q5SQ13 230 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 TMEM164Q5U3C3 297 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 ZADH2Q8N4Q0 377 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 TMEM105Q8N8V8 129 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 C8orf31Q8N9H6 132 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 TMEM75Q8N9X5 138 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 RND1Q92730 232 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 SLC25A15Q9Y619 301 aa7.74□□□□□ -1.17
SYNE1-230ENST00000495090 IGLV2-23P01705 113 aa7.73□□□□□ -1.17
SYNE1-230ENST00000495090 ARMS2P0C7Q2 107 aa7.73□□□□□ -1.17
SYNE1-230ENST00000495090 GLRXP35754 106 aa7.73□□□□□ -1.17
SYNE1-230ENST00000495090 UQCRFS1P47985 274 aa7.73□□□□□ -1.17
SYNE1-230ENST00000495090 NHLH1Q02575 133 aa7.73□□□□□ -1.17
SYNE1-230ENST00000495090 MEF2CQ06413 473 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-230ENST00000495090 CIARTQ8N365 385 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-230ENST00000495090 MAFAQ8NHW3 353 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-230ENST00000495090 ZNF71Q9NQZ8 489 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-230ENST00000495090 SPCS1Q9Y6A9 102 aa7.73□□□□□ -1.17
SYNE1-230ENST00000495090 A0A1W2PPI3 338 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 PRR33A8MZF0 331 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 SHISA9B4DS77 424 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 SNAI2O43623 268 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 THBDP07204 575 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 FABP2P12104 132 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 LGALS7P47929 136 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 PSG3Q16557 428 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 VMA21Q3ZAQ7 101 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 TEX36Q5VZQ5 186 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 DUX4L9Q6RFH8 374 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-230ENST00000495090 IGF2-ASQ6U949 168 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 BHLHA15Q7RTS1 189 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-230ENST00000495090 LINC00311Q8N616 119 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 C9orf106Q8NAJ2 232 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 TMEM186Q96B77 213 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 ABHD17AQ96GS6 310 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 GUCD1Q96NT3 240 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 ZNF785A8K8V0 405 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 HBDP02042 147 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 PAX8Q06710 450 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 TIMM23BQ5SRD1 257 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 SRSF12Q8WXF0 261 aaKnown RBP7.72□□□□□ -1.17
SYNE1-230ENST00000495090 TNFRSF14Q92956 283 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 HIGD1BQ9P298 99 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 HIGD1AQ9Y241 93 aa7.72□□□□□ -1.17
SYNE1-230ENST00000495090 DSCAMO60469 2012 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 SPRY3O43610 288 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 ZNF883P0CG24 379 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 IFI27P40305 119 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-230ENST00000495090 C10orf55Q5SWW7 151 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 FAM201AQ5SY85 155 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 SAMD13Q5VXD3 122 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 PRNTQ86SH4 94 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 LYPD1Q8N2G4 141 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 OR8A1Q8NGG7 326 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 ZC2HC1AQ96GY0 325 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 SIGLEC8Q9NYZ4 499 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 THYN1Q9P016 225 aa7.71□□□□□ -1.18
SYNE1-230ENST00000495090 ZNRD1Q9P1U0 126 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms