RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 RPRMQ9NS64 109 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 HSPB7Q9UBY9 170 aa8.34□□□□□ -1.07
COL6A3-213ENST00000493475 DUXBA0A1W2PPF3 345 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 NXPH3O95157 252 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 IGKV3-20P01619 116 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 AP3S2P59780 193 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 LYZP61626 148 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 GGNBP1Q5YKI7 109 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 FAAP20Q6NZ36 180 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 ZNF705AQ6ZN79 300 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-213ENST00000493475 KRTAP19-1Q8IUB9 90 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 OR51S1Q8NGJ8 323 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 LHFPL5Q8TAF8 219 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 NIPSNAP3BQ9BS92 247 aa8.33□□□□□ -1.08
COL6A3-213ENST00000493475 PAIP2BQ9ULR5 123 aaKnown RBP8.33□□□□□ -1.08
COL6A3-213ENST00000493475 PRSS29PA6NIE9 313 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 ZNF705FA8MVS1 300 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-213ENST00000493475 ZNF705DP0CH99 300 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-213ENST00000493475 ZNF705BP0CI00 300 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-213ENST00000493475 B2MP61769 119 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 PSG9Q00887 426 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 RRN3P1Q2M238 152 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 LGALS9BQ3B8N2 356 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 ZNF767PQ75MW2 155 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 RAB2BQ8WUD1 216 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 C16orf92Q96LL3 132 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 GPR82Q96P67 336 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 BCL7BQ9BQE9 202 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 MRPS26Q9BYN8 205 aaKnown RBP8.32□□□□□ -1.08
COL6A3-213ENST00000493475 MAGT1Q9H0U3 335 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 RBKSQ9H477 322 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 SLC45A2Q9UMX9 530 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 CELA1Q9UNI1 258 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 RNF24Q9Y225 148 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 TMED3Q9Y3Q3 217 aa8.32□□□□□ -1.08
COL6A3-213ENST00000493475 HECTD4Q9Y4D8 3996 aa8.31□□□□□ -1.08
COL6A3-213ENST00000493475 ANKRD20A5PA0PJZ0 165 aa8.31□□□□□ -1.08
COL6A3-213ENST00000493475 MED14OSP0DP75 135 aa8.31□□□□□ -1.08
COL6A3-213ENST00000493475 GAMTQ14353 236 aa8.31□□□□□ -1.08
COL6A3-213ENST00000493475 OXA1LQ15070 435 aa8.31□□□□□ -1.08
COL6A3-213ENST00000493475 RNF212Q495C1 297 aa8.31□□□□□ -1.08
COL6A3-213ENST00000493475 GSG1LQ6UXU4 331 aa8.31□□□□□ -1.08
COL6A3-213ENST00000493475 TRGV9Q99603 122 aa8.31□□□□□ -1.08
COL6A3-213ENST00000493475 NAA50Q9GZZ1 169 aaKnown RBP8.31□□□□□ -1.08
COL6A3-213ENST00000493475 CCDC59Q9P031 241 aaKnown RBP8.31□□□□□ -1.08
COL6A3-213ENST00000493475 LOC102723971A0A1B0GUV8 181 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 CTDSP2O14595 271 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 DUSP14O95147 198 aaKnown RBP8.3□□□□□ -1.08
COL6A3-213ENST00000493475 PAX9P55771 341 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 FAM3BP58499 235 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-213ENST00000493475 DAD1P61803 113 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 FAM222AQ5U5X8 452 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 C15orf53Q8NAA6 179 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 BPIFCQ8NFQ6 507 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 OR1B1Q8NGR6 318 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 ATG101Q9BSB4 218 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 TMEM147Q9BVK8 224 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 MIXL1Q9H2W2 232 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 DOK5Q9P104 306 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 DKK2Q9UBU2 259 aa8.3□□□□□ -1.08
COL6A3-213ENST00000493475 FABP12A6NFH5 140 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 SLC25A6P12236 298 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 HTN3P15516 51 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 VAMP1P23763 118 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 ALDH3B2P48448 385 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 ZNF90Q03938 601 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 TMEM128Q5BJH2 165 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 FAM78BQ5VT40 261 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 LYZL2Q7Z4W2 148 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 TMED4Q7Z7H5 227 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 OR4D5Q8NGN0 318 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 TMEM170AQ8WVE7 144 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 SLC25A22Q9H936 323 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 PPP1R14DQ9NXH3 145 aa8.29□□□□□ -1.08
COL6A3-213ENST00000493475 KRTAP4-8A0A0G2JLE6 195 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 M0R2N4 97 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 INSP01308 110 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 TMBIM6P55061 237 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 FXYD7P58549 80 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 AKR1C1Q04828 323 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 OR2F1Q13607 317 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 ZNF79Q15937 498 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 DEDD2Q8WXF8 326 aa8.28□□□□□ -1.08
COL6A3-213ENST00000493475 SLC25A21Q9BQT8 299 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-213ENST00000493475 WDR12Q9GZL7 423 aaKnown RBP8.28□□□□□ -1.08
COL6A3-213ENST00000493475 YTHDF2Q9Y5A9 579 aaKnown RBP8.28□□□□□ -1.08
COL6A3-213ENST00000493475 HERC2O95714 4834 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 AGRNO00468 2067 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 A0A0J9YX75 114 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 LYRM9A8MSI8 78 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 WRBO00258 174 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 RAP2BP61225 183 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 GDF5OSQ5U4N7 250 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 TOMM5Q8N4H5 51 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 ZNF709Q8N972 641 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 IGF2BP2-AS1Q96M15 143 aa8.27□□□□□ -1.09
COL6A3-213ENST00000493475 SCO2A0A1W2PP80 73 aa8.26□□□□□ -1.09
COL6A3-213ENST00000493475 SYNGR2O43760 224 aa8.26□□□□□ -1.09
COL6A3-213ENST00000493475 SMIM18P0DKX4 95 aa8.26□□□□□ -1.09
COL6A3-213ENST00000493475 IAPPP10997 89 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms