RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 HAGHQ16775 308 aa16.73■□□□□ 0.27
SMC4-221ENST00000489573 FAM209BQ5JX69 171 aa16.73■□□□□ 0.27
SMC4-221ENST00000489573 PQLC2Q6ZP29 291 aa16.73■□□□□ 0.27
SMC4-221ENST00000489573 ZNF414Q96IQ9 312 aa16.73■□□□□ 0.27
SMC4-221ENST00000489573 SLC25A2Q9BXI2 301 aa16.73■□□□□ 0.27
SMC4-221ENST00000489573 C16orf95Q9H693 158 aa16.73■□□□□ 0.27
SMC4-221ENST00000489573 TRAV5A0A0B4J249 113 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 GCHFRP30047 84 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 PPT1P50897 306 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 PEA15Q15121 130 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 USF2Q15853 346 aaPredicted RBP16.72■□□□□ 0.27
SMC4-221ENST00000489573 KLHDC1Q8N7A1 406 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 OR5AU1Q8NGC0 362 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 FAM167A-AS1Q96KT0 104 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 SLC25A39Q9BZJ4 359 aaPredicted RBP16.72■□□□□ 0.27
SMC4-221ENST00000489573 TREM1Q9NP99 234 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 IGHV3-35A0A0C4DH35 117 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 LOC102723971A0A1B0GUV8 181 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 I3L521 148 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 TCF21O43680 179 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 OR7C2O60412 319 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 TRBV12-3P01733 135 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 CD5P06127 495 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 BCL2P10415 239 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 ZNF506Q5JVG8 444 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 S100A7AQ86SG5 101 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 MANBALQ9NQG1 85 aa16.72■□□□□ 0.27
SMC4-221ENST00000489573 MTORP42345 2549 aa16.71■□□□□ 0.27
SMC4-221ENST00000489573 ANKRD34BA5PLL1 514 aa16.71■□□□□ 0.27
SMC4-221ENST00000489573 S100A1P23297 94 aa16.71■□□□□ 0.27
SMC4-221ENST00000489573 TOMM20LQ6UXN7 152 aa16.71■□□□□ 0.27
SMC4-221ENST00000489573 ZNF503Q96F45 646 aa16.71■□□□□ 0.27
SMC4-221ENST00000489573 RARRES2Q99969 163 aa16.71■□□□□ 0.27
SMC4-221ENST00000489573 ZFAND3Q9H8U3 227 aa16.71■□□□□ 0.27
SMC4-221ENST00000489573 H3BRN7 92 aa16.7■□□□□ 0.26
SMC4-221ENST00000489573 BMPR1BO00238 502 aa16.7■□□□□ 0.26
SMC4-221ENST00000489573 NARS2Q96I59 477 aaKnown RBP16.7■□□□□ 0.26
SMC4-221ENST00000489573 SHANK2-AS3Q9BTD1 123 aa16.7■□□□□ 0.26
SMC4-221ENST00000489573 NDUFA7O95182 113 aa16.69■□□□□ 0.26
SMC4-221ENST00000489573 TAGLN2P37802 199 aaKnown RBP16.69■□□□□ 0.26
SMC4-221ENST00000489573 ICAM4Q14773 271 aa16.69■□□□□ 0.26
SMC4-221ENST00000489573 STXBP6Q8NFX7 210 aa16.69■□□□□ 0.26
SMC4-221ENST00000489573 UBE2E2Q96LR5 201 aa16.69■□□□□ 0.26
SMC4-221ENST00000489573 OR5B12Q96R08 314 aa16.69■□□□□ 0.26
SMC4-221ENST00000489573 SMDT1Q9H4I9 107 aa16.69■□□□□ 0.26
SMC4-221ENST00000489573 TMEM167BQ9NRX6 74 aa16.69■□□□□ 0.26
SMC4-221ENST00000489573 PEF1Q9UBV8 284 aaKnown RBP16.69■□□□□ 0.26
SMC4-221ENST00000489573 PAXXQ9BUH6 204 aa16.68■□□□□ 0.26
SMC4-221ENST00000489573 RABAC1Q9UI14 185 aa16.68■□□□□ 0.26
SMC4-221ENST00000489573 VAX2Q9UIW0 290 aa16.68■□□□□ 0.26
SMC4-221ENST00000489573 GGCTO75223 188 aaKnown RBP16.68■□□□□ 0.26
SMC4-221ENST00000489573 LGALS1P09382 135 aaKnown RBP16.68■□□□□ 0.26
SMC4-221ENST00000489573 S100A7P31151 101 aa16.68■□□□□ 0.26
SMC4-221ENST00000489573 LEMD1Q68G75 181 aa16.68■□□□□ 0.26
SMC4-221ENST00000489573 LINC01006Q8NI28 216 aa16.68■□□□□ 0.26
SMC4-221ENST00000489573 RXFP4Q8TDU9 374 aa16.68■□□□□ 0.26
SMC4-221ENST00000489573 OR51M1Q9H341 326 aa16.68■□□□□ 0.26
SMC4-221ENST00000489573 C9JQL5 133 aa16.67■□□□□ 0.26
SMC4-221ENST00000489573 NDUFA4O00483 81 aa16.67■□□□□ 0.26
SMC4-221ENST00000489573 PAGE4O60829 102 aa16.67■□□□□ 0.26
SMC4-221ENST00000489573 OR10J4P0C629 311 aa16.67■□□□□ 0.26
SMC4-221ENST00000489573 UBE2L3P68036 154 aaKnown RBP16.67■□□□□ 0.26
SMC4-221ENST00000489573 WIPF2Q8TF74 440 aaPredicted RBP16.67■□□□□ 0.26
SMC4-221ENST00000489573 IGHV3OR16-8A0A075B7F1 116 aa16.66■□□□□ 0.26
SMC4-221ENST00000489573 TMEM218A2RU14 115 aa16.66■□□□□ 0.26
SMC4-221ENST00000489573 HSPB1P04792 205 aaKnown RBP16.66■□□□□ 0.26
SMC4-221ENST00000489573 PYYP10082 97 aa16.66■□□□□ 0.26
SMC4-221ENST00000489573 C2CD3Q4AC94 2353 aa16.65■□□□□ 0.26
SMC4-221ENST00000489573 ZNF98A6NK75 572 aa16.65■□□□□ 0.26
SMC4-221ENST00000489573 KRBOX1C9JBD0 128 aa16.65■□□□□ 0.26
SMC4-221ENST00000489573 GP9P14770 177 aa16.65■□□□□ 0.26
SMC4-221ENST00000489573 RIPPLY3P57055 190 aa16.65■□□□□ 0.26
SMC4-221ENST00000489573 UBE2G2P60604 165 aa16.65■□□□□ 0.26
SMC4-221ENST00000489573 SUN5Q8TC36 379 aa16.65■□□□□ 0.26
SMC4-221ENST00000489573 RNF24Q9Y225 148 aa16.65■□□□□ 0.26
SMC4-221ENST00000489573 NIPBLQ6KC79 2804 aaeCLIP16.65■□□□□ 0.268e-8■■■■■ 47
SMC4-221ENST00000489573 ZP3P21754 424 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 MEF2BQ02080 365 aaPredicted RBP16.64■□□□□ 0.25
SMC4-221ENST00000489573 TCTEX1D4Q5JR98 221 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 OR4F5Q8NH21 305 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 FXYD5Q96DB9 178 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 LINC00052Q96N35 136 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 TMEM14CQ9P0S9 112 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 ARL2-SNX15V9GYD0 113 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 FN1P02751 2386 aaKnown RBP16.64■□□□□ 0.25
SMC4-221ENST00000489573 CLPSL1A2RUU4 121 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 SFTA3P0C7M3 94 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 METTL26Q96S19 204 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 C20orf24Q9BUV8 137 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 SLC35B3Q9H1N7 401 aa16.64■□□□□ 0.25
SMC4-221ENST00000489573 SRP19P09132 144 aaKnown RBP16.63■□□□□ 0.25
SMC4-221ENST00000489573 CDX1P47902 265 aaPredicted RBP16.63■□□□□ 0.25
SMC4-221ENST00000489573 CST9LP1Q5W188 147 aa16.63■□□□□ 0.25
SMC4-221ENST00000489573 BPIFA4PQ86YQ2 179 aa16.63■□□□□ 0.25
SMC4-221ENST00000489573 YTHDF2Q9Y5A9 579 aaKnown RBP16.63■□□□□ 0.25
SMC4-221ENST00000489573 FAM74A7A6NL05 159 aa16.62■□□□□ 0.25
SMC4-221ENST00000489573 C11orf94C9JXX5 98 aa16.62■□□□□ 0.25
SMC4-221ENST00000489573 KHDC1LQ5JSQ8 128 aa16.62■□□□□ 0.25
SMC4-221ENST00000489573 TMEM190Q8WZ59 177 aa16.62■□□□□ 0.25
SMC4-221ENST00000489573 TXNDC17Q9BRA2 123 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms