RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	RTL8C	O15255	209 aa		13.14	□□□□□ -0.31
HDAC6-231	ENST00000488905	FABP1	P07148	127 aa		13.14	□□□□□ -0.31
HDAC6-231	ENST00000488905	ALDH3B2	P48448	385 aa		13.14	□□□□□ -0.31
HDAC6-231	ENST00000488905	SPATA31B1P	Q5VZV4	182 aa		13.14	□□□□□ -0.31
HDAC6-231	ENST00000488905	OR4B1	Q8NGF8	309 aa		13.14	□□□□□ -0.31
HDAC6-231	ENST00000488905	SLC35B3	Q9H1N7	401 aa		13.14	□□□□□ -0.31
HDAC6-231	ENST00000488905	DKK2	Q9UBU2	259 aa		13.14	□□□□□ -0.31
HDAC6-231	ENST00000488905	ISLR	O14498	428 aa		13.13	□□□□□ -0.31
HDAC6-231	ENST00000488905	PAX9	P55771	341 aa		13.13	□□□□□ -0.31
HDAC6-231	ENST00000488905	LGALS9B	Q3B8N2	356 aa		13.13	□□□□□ -0.31
HDAC6-231	ENST00000488905	FAM222A	Q5U5X8	452 aa		13.13	□□□□□ -0.31
HDAC6-231	ENST00000488905	DYNC2LI1	Q8TCX1	351 aa		13.13	□□□□□ -0.31
HDAC6-231	ENST00000488905	PPP1R14B	Q96C90	147 aa		13.13	□□□□□ -0.31
HDAC6-231	ENST00000488905	FAM210B	Q96KR6	192 aa		13.13	□□□□□ -0.31
HDAC6-231	ENST00000488905	SNRPGP15	A8MWD9	76 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	OR2F1	Q13607	317 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	SAMD13	Q5VXD3	122 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	GSG1L	Q6UXU4	331 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	UBE2DNL	Q8IWF7	75 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	OR8I2	Q8N0Y5	310 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	RAB2B	Q8WUD1	216 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	TRGV9	Q99603	122 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	NIPSNAP3B	Q9BS92	247 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	RSL24D1	Q9UHA3	163 aa	Known RBP	13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	GOLT1B	Q9Y3E0	138 aa		13.12	□□□□□ -0.31
HDAC6-231	ENST00000488905	IGKV1OR2-108	A0A075B7D4	117 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905		A0A0J9YX75	114 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905	DUXB	A0A1W2PPF3	345 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905		F6UB75	175 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905	IAPP	P10997	89 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905	RAB11A	P62491	216 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905	PSG9	Q00887	426 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905	FAM78B	Q5VT40	261 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905	EBLN2	Q6P2I7	272 aa		13.11	□□□□□ -0.31
HDAC6-231	ENST00000488905	PIGBOS1	A0A0B4J2F0	54 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	LOC102723971	A0A1B0GUV8	181 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	PITX3	O75364	302 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	IFNA21	P01568	189 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	HBE1	P02100	147 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	MED14OS	P0DP75	135 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	MEOX2	P50222	304 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	C1orf158	Q8N1D5	194 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	THAP8	Q8NA92	274 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	C7orf50	Q9BRJ6	194 aa	Known RBP	13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	RPRM	Q9NS64	109 aa		13.1	□□□□□ -0.31
HDAC6-231	ENST00000488905	ABCA13	Q86UQ4	5058 aa		13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905	IGLV2-18	A0A075B6J9	118 aa		13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905	HTN3	P15516	51 aa		13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905	OXA1L	Q15070	435 aa		13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905	C20orf173	Q96LM9	149 aa		13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905	BCL7B	Q9BQE9	202 aa		13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905	SLC25A32	Q9H2D1	315 aa		13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905	PAIP2B	Q9ULR5	123 aa	Known RBP	13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905	YTHDF2	Q9Y5A9	579 aa	Known RBP	13.09	□□□□□ -0.31
HDAC6-231	ENST00000488905		A8MTW9	85 aa		13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	CFD	P00746	253 aa	Predicted RBP	13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	FAU	P35544	74 aa	Known RBP	13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	GALR1	P47211	349 aa		13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905		Q6ZR54	194 aa		13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	TMED4	Q7Z7H5	227 aa		13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	C16orf92	Q96LL3	132 aa		13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	SLIRP	Q9GZT3	109 aa	Known RBP	13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	DOK5	Q9P104	306 aa		13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	SLC45A2	Q9UMX9	530 aa		13.08	□□□□□ -0.32
HDAC6-231	ENST00000488905	HSPG2	P98160	4391 aa		13.07	□□□□□ -0.32
HDAC6-231	ENST00000488905	SLC25A6	P12236	298 aa		13.07	□□□□□ -0.32
HDAC6-231	ENST00000488905	RRN3P1	Q2M238	152 aa		13.07	□□□□□ -0.32
HDAC6-231	ENST00000488905	TMEM128	Q5BJH2	165 aa		13.07	□□□□□ -0.32
HDAC6-231	ENST00000488905	SOST	Q9BQB4	213 aa		13.07	□□□□□ -0.32
HDAC6-231	ENST00000488905	SLC25A22	Q9H936	323 aa		13.07	□□□□□ -0.32
HDAC6-231	ENST00000488905	PLA2G2E	Q9NZK7	142 aa		13.07	□□□□□ -0.32
HDAC6-231	ENST00000488905	FABP12	A6NFH5	140 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	PRSS46	E5RG02	174 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	MED6	O75586	246 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	TNFSF8	P32971	234 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	TMBIM6	P55061	237 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	RNF212	Q495C1	297 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	GGNBP1	Q5YKI7	109 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	AMTN	Q6UX39	209 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	LRTM2	Q8N967	370 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	TRIM63	Q969Q1	353 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	C17orf77	Q96MU5	243 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	CIB3	Q96Q77	187 aa	Predicted RBP	13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	MAGT1	Q9H0U3	335 aa		13.06	□□□□□ -0.32
HDAC6-231	ENST00000488905	ZNF98	A6NK75	572 aa		13.05	□□□□□ -0.32
HDAC6-231	ENST00000488905	VAMP1	P23763	118 aa		13.05	□□□□□ -0.32
HDAC6-231	ENST00000488905	DAD1	P61803	113 aa		13.05	□□□□□ -0.32
HDAC6-231	ENST00000488905	TMEM88	Q6PEY1	159 aa		13.05	□□□□□ -0.32
HDAC6-231	ENST00000488905	IGF2BP2-AS1	Q96M15	143 aa		13.05	□□□□□ -0.32
HDAC6-231	ENST00000488905	TMEM208	Q9BTX3	173 aa		13.05	□□□□□ -0.32
HDAC6-231	ENST00000488905	RSG1	Q9BU20	258 aa		13.05	□□□□□ -0.32
HDAC6-231	ENST00000488905	AP3S2	P59780	193 aa		13.04	□□□□□ -0.32
HDAC6-231	ENST00000488905	RPP30	P78346	268 aa	Known RBP	13.04	□□□□□ -0.32
HDAC6-231	ENST00000488905	BPIFC	Q8NFQ6	507 aa		13.04	□□□□□ -0.32
HDAC6-231	ENST00000488905	OR4D5	Q8NGN0	318 aa		13.04	□□□□□ -0.32
HDAC6-231	ENST00000488905	OR1B1	Q8NGR6	318 aa		13.04	□□□□□ -0.32
HDAC6-231	ENST00000488905	GPR82	Q96P67	336 aa		13.04	□□□□□ -0.32
HDAC6-231	ENST00000488905	TMED3	Q9Y3Q3	217 aa		13.04	□□□□□ -0.32
HDAC6-231	ENST00000488905	WRB	O00258	174 aa		13.03	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms