RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 A0A1B0GWJ7 208 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 ERVK11-1P61568 191 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 H0YJW9 148 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 MAJINQ3KP22 176 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 C20orf204Q6ZNR8 217 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 KIR3DL3Q8N743 410 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 SMPXQ9UHP9 88 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 SPTA1P02549 2419 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 IGKV2-40A0A087WW87 121 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-210ENST00000487017 HOXA3O43365 443 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-210ENST00000487017 IGKV2D-40P01614 121 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-210ENST00000487017 VDAC2P45880 294 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-210ENST00000487017 NUP35Q8NFH5 326 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 TRAV2A0A0B4J234 112 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 IGHV1-3A0A0C4DH29 117 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 E9PLN8 166 aa13.48□□□□□ -0.25
COL7A1-210ENST00000487017 SLC25A20O43772 301 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 LINC01559Q495D7 138 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 TRPM7Q96QT4 1865 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 TMEM178BH3BS89 294 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 CD33P20138 364 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 D6R8Y8 96 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 OVOL1O14753 267 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 OR9G4Q8NGQ1 327 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 OR2K2Q8NGT1 345 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 PAX8Q06710 450 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 SIGLEC15Q6ZMC9 328 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 MDS2Q8NDY4 140 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 DUSP14O95147 198 aaKnown RBP13.47□□□□□ -0.25
COL7A1-210ENST00000487017 CSRP1P21291 193 aaKnown RBP13.47□□□□□ -0.25
COL7A1-210ENST00000487017 DEFB104AQ8WTQ1 72 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 RNF5Q99942 180 aa13.47□□□□□ -0.25
COL7A1-210ENST00000487017 GAFA1Q96PS6 74 aa13.46□□□□□ -0.25
COL7A1-210ENST00000487017 C11orf68Q9H3H3 251 aaKnown RBP13.46□□□□□ -0.25
COL7A1-210ENST00000487017 LINC00527Q9UJ94 153 aa13.46□□□□□ -0.25
COL7A1-210ENST00000487017 ANAPC10Q9UM13 185 aa13.46□□□□□ -0.25
COL7A1-210ENST00000487017 C9JQL5 133 aa13.46□□□□□ -0.25
COL7A1-210ENST00000487017 SIGMAR1Q99720 223 aa13.46□□□□□ -0.25
COL7A1-210ENST00000487017 MRPL27Q9P0M9 148 aaKnown RBP13.46□□□□□ -0.25
COL7A1-210ENST00000487017 MPDZO75970 2070 aa13.46□□□□□ -0.25
COL7A1-210ENST00000487017 C3orf79P0CE67 100 aa13.46□□□□□ -0.26
COL7A1-210ENST00000487017 LAGE3Q14657 143 aa13.46□□□□□ -0.26
COL7A1-210ENST00000487017 PRR31Q5SQ13 230 aa13.46□□□□□ -0.26
COL7A1-210ENST00000487017 BMPERQ8N8U9 685 aa13.46□□□□□ -0.26
COL7A1-210ENST00000487017 ANAPC13Q9BS18 74 aa13.46□□□□□ -0.26
COL7A1-210ENST00000487017 IGKV1D-17A0A075B6S4 117 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 CACNA1DQ01668 2161 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 TRGV4A0A0C4DH28 118 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 LINC00205P59089 165 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 ZNF672Q499Z4 452 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-210ENST00000487017 LYZL1Q6UWQ5 148 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 NSUN5P1Q3KNT7 163 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 ESPL1Q14674 2120 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 FNDC10F2Z333 226 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 TPTE2P1Q5T6R2 138 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 ZNF479Q96JC4 524 aa13.45□□□□□ -0.26
COL7A1-210ENST00000487017 DLEU1O43261 78 aa13.44□□□□□ -0.26
COL7A1-210ENST00000487017 NCR2O95944 276 aa13.44□□□□□ -0.26
COL7A1-210ENST00000487017 RPL15P61313 204 aaKnown RBP13.44□□□□□ -0.26
COL7A1-210ENST00000487017 ZNF415Q09FC8 603 aa13.44□□□□□ -0.26
COL7A1-210ENST00000487017 SAMD5Q5TGI4 173 aa13.44□□□□□ -0.26
COL7A1-210ENST00000487017 CD28P10747 220 aa13.44□□□□□ -0.26
COL7A1-210ENST00000487017 LINC01549A6NIU2 74 aa13.44□□□□□ -0.26
COL7A1-210ENST00000487017 RSPO3Q9BXY4 272 aaPredicted RBP13.44□□□□□ -0.26
COL7A1-210ENST00000487017 C15orf32Q32M92 178 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 ZNF664Q8N3J9 261 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 RNF182Q8N6D2 247 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 NPC2P61916 151 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 IGKV1-6A0A0C4DH72 117 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 MRPL52Q86TS9 123 aaKnown RBP13.43□□□□□ -0.26
COL7A1-210ENST00000487017 DMRTC2Q8IXT2 367 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-210ENST00000487017 RPRMLQ8N4K4 120 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 MYLKQ15746 1914 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 TRAV41A0A0B4J266 112 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 CRPP02741 224 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 LCN12Q6JVE5 192 aa13.43□□□□□ -0.26
COL7A1-210ENST00000487017 TRGV11A0A075B6L2 103 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 RNASE2P10153 161 aaKnown RBP13.42□□□□□ -0.26
COL7A1-210ENST00000487017 WNT2P09544 360 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 PSG3Q16557 428 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 ZNF329Q86UD4 541 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 hDV102S1A0JD36 115 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 HS3ST6Q96QI5 342 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 CHCHD5Q9BSY4 110 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 THSD7BQ9C0I4 1608 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 SH2D1AO60880 128 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 VMO1Q7Z5L0 202 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 GTSCR1Q86UQ5 136 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 PRSS22Q9GZN4 317 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 RTTNQ86VV8 2226 aa13.42□□□□□ -0.26
COL7A1-210ENST00000487017 ETV2O00321 342 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-210ENST00000487017 GUSBP1Q15486 140 aa13.41□□□□□ -0.26
COL7A1-210ENST00000487017 PHLDA1Q8WV24 401 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-210ENST00000487017 C1orf147Q96MC9 270 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-210ENST00000487017 SYS1-DBNDD2H3BUS1 97 aa13.41□□□□□ -0.26
COL7A1-210ENST00000487017 CD300EQ496F6 205 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-210ENST00000487017 OOSP1A8MZH6 123 aa13.41□□□□□ -0.26
COL7A1-210ENST00000487017 TOMM40O96008 361 aa13.41□□□□□ -0.26
COL7A1-210ENST00000487017 TDGF1P3P51864 188 aa13.41□□□□□ -0.26
COL7A1-210ENST00000487017 LYPD1Q8N2G4 141 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms