RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TOMM40O96008 361 aa13□□□□□ -0.33
VIM-205ENST00000485947 IGKV1-17P01599 117 aa13□□□□□ -0.33
VIM-205ENST00000485947 LINC00869P0C866 280 aa13□□□□□ -0.33
VIM-205ENST00000485947 TIGITQ495A1 244 aa13□□□□□ -0.33
VIM-205ENST00000485947 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.99□□□□□ -0.33
VIM-205ENST00000485947 ZNF705EA8MWA4 302 aaPredicted RBP12.99□□□□□ -0.33
VIM-205ENST00000485947 SAP30O75446 220 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 YIF1AO95070 293 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 IGHV3-11P01762 117 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 IGHV3-23P01764 117 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 SLURP1P55000 103 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 PLP1P60201 277 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 ZNF90Q03938 601 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 ZNF343Q6P1L6 599 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 OR1L4Q8NGR5 311 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 PFDN5Q99471 154 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 RNF2Q99496 336 aa12.99□□□□□ -0.33
VIM-205ENST00000485947 OR2T8A6NH00 312 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 TGOLN2O43493 480 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 CTSGP08311 255 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 NMBP08949 121 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 GPR183P32249 361 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 RAB2AP61019 212 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 CLEC19AQ6UXS0 136 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 OR51G1Q8NGK1 321 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 OR10G4Q8NGN3 311 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 OR10G9Q8NGN4 311 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 OR10G7Q8NGN6 311 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 FAM213BQ8TBF2 198 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 VSIRQ9H7M9 311 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 RPRMQ9NS64 109 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 PEF1Q9UBV8 284 aaKnown RBP12.98□□□□□ -0.33
VIM-205ENST00000485947 TENM3Q9P273 2699 aa12.98□□□□□ -0.33
VIM-205ENST00000485947 CLEC3BP05452 202 aa12.97□□□□□ -0.33
VIM-205ENST00000485947 RD3LP0DJH9 198 aa12.97□□□□□ -0.33
VIM-205ENST00000485947 PSG1P11464 419 aa12.97□□□□□ -0.33
VIM-205ENST00000485947 GATA2P23769 480 aaPredicted RBP12.97□□□□□ -0.33
VIM-205ENST00000485947 RELQ04864 619 aaPredicted RBP12.97□□□□□ -0.33
VIM-205ENST00000485947 KLF5Q13887 457 aaPredicted RBP12.97□□□□□ -0.33
VIM-205ENST00000485947 ZNF600Q6ZNG1 722 aa12.97□□□□□ -0.33
VIM-205ENST00000485947 Q8WTZ3 238 aa12.97□□□□□ -0.33
VIM-205ENST00000485947 GATAD1Q8WUU5 269 aa12.97□□□□□ -0.33
VIM-205ENST00000485947 ACTR3CQ9C0K3 210 aaPredicted RBP12.97□□□□□ -0.33
VIM-205ENST00000485947 ELOA3CA0A087WX78 387 aaPredicted RBP12.96□□□□□ -0.33
VIM-205ENST00000485947 CTXND1A0A1B0GTU2 59 aa12.96□□□□□ -0.33
VIM-205ENST00000485947 OR2C1O95371 312 aa12.96□□□□□ -0.33
VIM-205ENST00000485947 ADMP35318 185 aa12.96□□□□□ -0.33
VIM-205ENST00000485947 ARL3P36405 182 aa12.96□□□□□ -0.33
VIM-205ENST00000485947 CDC34P49427 236 aaPredicted RBP12.96□□□□□ -0.33
VIM-205ENST00000485947 PRR25Q96S07 402 aa12.96□□□□□ -0.33
VIM-205ENST00000485947 MRPL32Q9BYC8 188 aaKnown RBP12.96□□□□□ -0.33
VIM-205ENST00000485947 SIGLEC8Q9NYZ4 499 aa12.96□□□□□ -0.33
VIM-205ENST00000485947 SMAD5-AS1Q9Y6J3 95 aa12.96□□□□□ -0.33
VIM-205ENST00000485947 SORL1Q92673 2214 aa12.96□□□□□ -0.34
VIM-205ENST00000485947 A0A1W2PPV4 95 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 TEX46H3BTG2 121 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 COX7A2P2O60397 106 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 HBE1P02100 147 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 OR5G3P0C626 314 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 RHOBP62745 196 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 FAM122CQ6P4D5 195 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 S100A7AQ86SG5 101 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 RPP25LQ8N5L8 163 aaKnown RBP12.95□□□□□ -0.34
VIM-205ENST00000485947 CHRDL1Q9BU40 450 aa12.95□□□□□ -0.34
VIM-205ENST00000485947 HYPMO75409 117 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 IGLV1-51P01701 117 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 H2AFB1P0C5Y9 115 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 FHITP49789 147 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 GCSAMLQ5JQS6 135 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 OR9G4Q8NGQ1 327 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 LYPD6BQ8NI32 183 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 MBD3L1Q8WWY6 194 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 RNF125Q96EQ8 232 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 DNAJC4Q9NNZ3 241 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 FUT9Q9Y231 359 aa12.94□□□□□ -0.34
VIM-205ENST00000485947 TRAV1-1A0A0B4J248 108 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 ANKRD34BA5PLL1 514 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 GGCTO75223 188 aaKnown RBP12.93□□□□□ -0.34
VIM-205ENST00000485947 IL4P05112 153 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 S100A7P31151 101 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 LYZP61626 148 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 ZNF726P1Q15940 193 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 RPEL1Q2QD12 228 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 C10orf113Q5VZT2 155 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 TMEM37Q8WXS4 190 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 SLC25A22Q9H936 323 aa12.93□□□□□ -0.34
VIM-205ENST00000485947 PUS1Q9Y606 427 aaKnown RBP eCLIP12.93□□□□□ -0.34
VIM-205ENST00000485947 MAP1LC3B2A6NCE7 125 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 BMPR1BO00238 502 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 NDUFA4O00483 81 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 GP9P14770 177 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 ORM2P19652 201 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 COL7A1Q02388 2944 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 NDUFA5Q16718 116 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 FAM78BQ5VT40 261 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 PATE2Q6UY27 113 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 OR1B1Q8NGR6 318 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 PCNPQ8WW12 178 aaKnown RBP12.92□□□□□ -0.34
VIM-205ENST00000485947 RAB24Q969Q5 203 aa12.92□□□□□ -0.34
VIM-205ENST00000485947 MAP1LC3BQ9GZQ8 125 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms