RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 STAG3L3P0CL85 134 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 C8orf88P0DMB2 117 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 ORM2P19652 201 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 NPPCP23582 126 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 GATA2P23769 480 aaPredicted RBP7.82□□□□□ -1.16
USP39-215ENST00000481409 PSMB3P49720 205 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 DEFA5Q01523 94 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 TOMM20LQ6UXN7 152 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 LINC00305Q7Z4B0 112 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 C1QL4Q86Z23 238 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 DPF1Q92782 380 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 MARC2Q969Z3 335 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 ELOVL1Q9BW60 279 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 SLC25A39Q9BZJ4 359 aaPredicted RBP7.82□□□□□ -1.16
USP39-215ENST00000481409 TMEM231Q9H6L2 316 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 DAZ1Q9NQZ3 744 aaKnown RBP7.82□□□□□ -1.16
USP39-215ENST00000481409 ARL2-SNX15V9GYD0 113 aa7.82□□□□□ -1.16
USP39-215ENST00000481409 MAP1LC3B2A6NCE7 125 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 A8MWP6 167 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 PPP5D1E7EU14 171 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 H3BRN7 92 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 NDUFS6O75380 124 aaKnown RBP7.81□□□□□ -1.16
USP39-215ENST00000481409 CD28P10747 220 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 CRYBB3P26998 211 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 MEOX2P50222 304 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 KHDC1LQ5JSQ8 128 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 FAM122CQ6P4D5 195 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 PATE2Q6UY27 113 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 IL34Q6ZMJ4 242 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 LCNL1Q6ZST4 164 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.81□□□□□ -1.16
USP39-215ENST00000481409 KLHL30-AS1Q8NEE0 82 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 OR1N2Q8NGR9 330 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 SFT2D1Q8WV19 159 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 TMEM158Q8WZ71 300 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 TXNDC17Q9BRA2 123 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 SHANK2-AS3Q9BTD1 123 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 PBDC1Q9BVG4 233 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 MAP1LC3BQ9GZQ8 125 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 VSIRQ9H7M9 311 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 SEPSECSQ9HD40 501 aaKnown RBP7.81□□□□□ -1.16
USP39-215ENST00000481409 TMEM167BQ9NRX6 74 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 TMEM14CQ9P0S9 112 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 PEMTQ9UBM1 199 aa7.81□□□□□ -1.16
USP39-215ENST00000481409 LINC00862A6NCI5 91 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 IFNA1P01562 189 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 RPL7P18124 248 aaKnown RBP7.8□□□□□ -1.16
USP39-215ENST00000481409 MYCNOSP40205 109 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 FHL3Q13643 280 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 KLF5Q13887 457 aaPredicted RBP7.8□□□□□ -1.16
USP39-215ENST00000481409 USF2Q15853 346 aaPredicted RBP7.8□□□□□ -1.16
USP39-215ENST00000481409 AWAT1Q58HT5 328 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 BPIFA4PQ86YQ2 179 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 OR11H1Q8NG94 326 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 SUN5Q8TC36 379 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 GRAMD2BQ96HH9 432 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 CITED2Q99967 270 aaPredicted RBP7.8□□□□□ -1.16
USP39-215ENST00000481409 NKX6-2Q9C056 277 aaPredicted RBP7.8□□□□□ -1.16
USP39-215ENST00000481409 SMDT1Q9H4I9 107 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 RFNGQ9Y644 331 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 U3KQE9 123 aa7.8□□□□□ -1.16
USP39-215ENST00000481409 IGHV4OR15-8A0A075B7B6 117 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 A0A087WW49 117 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 RAB19A4D1S5 217 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 ZNF98A6NK75 572 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 BUB3O43684 328 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 TRBV12-3P01733 135 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 HOXD3P31249 432 aaPredicted RBP7.79□□□□□ -1.16
USP39-215ENST00000481409 FHITP49789 147 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 ZNF726P1Q15940 193 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 GUK1Q16774 197 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 GCSAMLQ5JQS6 135 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 SAMD13Q5VXD3 122 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 ZNF414Q96IQ9 312 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 CITED1Q99966 193 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 OR51M1Q9H341 326 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 SLC25A22Q9H936 323 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 MANBALQ9NQG1 85 aa7.79□□□□□ -1.16
USP39-215ENST00000481409 M0QZ24 198 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 CCL24O00175 119 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 OR7C2O60412 319 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 PDE6HQ13956 83 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 LCN15Q6UWW0 184 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 MIR17HGQ75NE6 70 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 EIF4E3Q8N5X7 224 aaKnown RBP7.78□□□□□ -1.16
USP39-215ENST00000481409 OR4F17Q8NGA8 305 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 FAM167A-AS1Q96KT0 104 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 OR5B12Q96R08 314 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 OR4F4Q96R69 305 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 TCEAL7Q9BRU2 100 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 PAXXQ9BUH6 204 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 C20orf24Q9BUV8 137 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 SLC25A2Q9BXI2 301 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 HRH4Q9H3N8 390 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 CLEC5AQ9NY25 188 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 SIGLEC8Q9NYZ4 499 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 DOK5Q9P104 306 aa7.78□□□□□ -1.16
USP39-215ENST00000481409 IGHV7-4-1A0A0J9YVY3 117 aa7.77□□□□□ -1.17
USP39-215ENST00000481409 ZNF320A2RRD8 509 aa7.77□□□□□ -1.17
USP39-215ENST00000481409 HELTA6NFD8 242 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms