RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SMKR1H3BMG3 65 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.06□□□□□ -0.64
USP42-206ENST00000479544 LINC00173Q6ZV60 143 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 C9orf106Q8NAJ2 232 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 ZNF257Q9Y2Q1 563 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 ACACBO00763 2458 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 SORL1Q92673 2214 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 SPTBN4Q9H254 2564 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 APOMO95445 188 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 TEX45Q8NA69 505 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 FDCSPQ8NFU4 85 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 IGKV3D-15A0A087WSY6 115 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 M0R3E3 92 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 PDLIM4P50479 330 aa11.05□□□□□ -0.64
USP42-206ENST00000479544 NDUFA3O95167 84 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 C1orf185Q5T7R7 199 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 EBLN2Q6P2I7 272 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 GFRALQ6UXV0 394 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 OR1N2Q8NGR9 330 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 C5orf30Q96GV9 206 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 SPRR3Q9UBC9 169 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 OTOGLQ3ZCN5 2332 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 RBPJQ06330 500 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 TIMM23BQ5SRD1 257 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 ORMDL3Q8N138 153 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 OR4A5Q8NH83 315 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 OSR1Q8TAX0 266 aaPredicted RBP11.04□□□□□ -0.64
USP42-206ENST00000479544 CACNG8Q8WXS5 425 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 TIMD4Q96H15 378 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 BEX4Q9NWD9 120 aaPredicted RBP11.04□□□□□ -0.64
USP42-206ENST00000479544 KIR3DS1Q14943 382 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 D6R8Y8 96 aa11.04□□□□□ -0.64
USP42-206ENST00000479544 DUX4L9Q6RFH8 374 aaPredicted RBP11.04□□□□□ -0.64
USP42-206ENST00000479544 EML6Q6ZMW3 1958 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 FAM90A27PA6NNH2 459 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 PMS2P5A8MQ11 134 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 NPIPB5A8MRT5 1133 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 NPIPB11E5RHQ5 1161 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 IGKV1D-17A0A075B6S4 117 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 TCRBV4S1A1TA0A5B7 111 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 WNT2P09544 360 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 DLX1P56177 255 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 BCL6BQ8N143 479 aaPredicted RBP11.03□□□□□ -0.64
USP42-206ENST00000479544 C9orf172C9J069 976 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 ITGB1BP1O14713 200 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 SAP30O75446 220 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 MC5RP33032 325 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 ZNF134P52741 427 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 IGFL4Q6B9Z1 124 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 GTSCR1Q86UQ5 136 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 IFI27L1Q96BM0 104 aa11.03□□□□□ -0.64
USP42-206ENST00000479544 MRPL27Q9P0M9 148 aaKnown RBP11.03□□□□□ -0.64
USP42-206ENST00000479544 SETD2Q9BYW2 2564 aaPredicted RBP11.03□□□□□ -0.64
USP42-206ENST00000479544 KLF17Q5JT82 389 aaPredicted RBP11.02□□□□□ -0.64
USP42-206ENST00000479544 SAMD5Q5TGI4 173 aa11.02□□□□□ -0.64
USP42-206ENST00000479544 FAM90A1Q86YD7 464 aa11.02□□□□□ -0.64
USP42-206ENST00000479544 C11orf1Q9H5F2 150 aa11.02□□□□□ -0.64
USP42-206ENST00000479544 SONP18583 2426 aaKnown RBP11.02□□□□□ -0.65
USP42-206ENST00000479544 A0A1B0GV72 72 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 ARMS2P0C7Q2 107 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 ZNF788Q6ZQV5 615 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 ZNF295-AS1Q8N0V1 137 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 OBSL1O75147 1896 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 NACAE9PAV3 2078 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 LEPP41159 167 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 KIAA1549Q9HCM3 1950 aa11.02□□□□□ -0.65
USP42-206ENST00000479544 IFI27P40305 119 aaPredicted RBP11.01□□□□□ -0.65
USP42-206ENST00000479544 MRPL16Q9NX20 251 aaKnown RBP11.01□□□□□ -0.65
USP42-206ENST00000479544 MRPS18CQ9Y3D5 142 aaKnown RBP11.01□□□□□ -0.65
USP42-206ENST00000479544 NTN3O00634 580 aaPredicted RBP11.01□□□□□ -0.65
USP42-206ENST00000479544 PRSS2P07478 247 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 VDAC2P45880 294 aaPredicted RBP11.01□□□□□ -0.65
USP42-206ENST00000479544 TTC9CQ8N5M4 171 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 OR11H12B2RN74 326 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 AMN1Q8IY45 258 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 OR11H1Q8NG94 326 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 OR11H2Q8NH07 326 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 TMEM186Q96B77 213 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 SRRM5B3KS81 715 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 GLRXP35754 106 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 FMC1Q96HJ9 113 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 RPUSD1Q9UJJ7 312 aaKnown RBP11.01□□□□□ -0.65
USP42-206ENST00000479544 PSG8Q9UQ74 426 aa11.01□□□□□ -0.65
USP42-206ENST00000479544 TLN1Q9Y490 2541 aaKnown RBP11□□□□□ -0.65
USP42-206ENST00000479544 AHRRA9YTQ3 701 aa11□□□□□ -0.65
USP42-206ENST00000479544 LYNX1G3V0Z9 82 aa11□□□□□ -0.65
USP42-206ENST00000479544 C16orf97H3BN30 126 aa11□□□□□ -0.65
USP42-206ENST00000479544 M0R381 172 aa11□□□□□ -0.65
USP42-206ENST00000479544 LYNX1P0DP58 116 aa11□□□□□ -0.65
USP42-206ENST00000479544 CFHR2P36980 270 aa11□□□□□ -0.65
USP42-206ENST00000479544 IGHV2-26A0A0B4J1V2 119 aa11□□□□□ -0.65
USP42-206ENST00000479544 CD5LO43866 347 aa11□□□□□ -0.65
USP42-206ENST00000479544 TCRAP04437 139 aa11□□□□□ -0.65
USP42-206ENST00000479544 SEC11AP67812 179 aa11□□□□□ -0.65
USP42-206ENST00000479544 SIGMAR1Q99720 223 aa11□□□□□ -0.65
USP42-206ENST00000479544 Q6ZR03 302 aa11□□□□□ -0.65
USP42-206ENST00000479544 MRPL52Q86TS9 123 aaKnown RBP11□□□□□ -0.65
USP42-206ENST00000479544 Q8TAT8 98 aa11□□□□□ -0.65
USP42-206ENST00000479544 CHCHD1Q96BP2 118 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms