RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 HLA-DMBP28068 263 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 SPANXN5Q5MJ07 72 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 OR4D5Q8NGN0 318 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 C2CD4CQ8TF44 421 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 APLNQ9ULZ1 77 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 CELA1Q9UNI1 258 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 FABP1P07148 127 aa13.37□□□□□ -0.27
COL7A1-209ENST00000474432 POLR2GP62487 172 aaKnown RBP eCLIP13.37□□□□□ -0.27
COL7A1-209ENST00000474432 PRR20EP86478 221 aa13.37□□□□□ -0.27
COL7A1-209ENST00000474432 PRR20CP86479 221 aa13.37□□□□□ -0.27
COL7A1-209ENST00000474432 PRR20DP86480 221 aa13.37□□□□□ -0.27
COL7A1-209ENST00000474432 PRR20BP86481 221 aa13.37□□□□□ -0.27
COL7A1-209ENST00000474432 PRR20AP86496 221 aa13.37□□□□□ -0.27
COL7A1-209ENST00000474432 SAV1Q9H4B6 383 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-209ENST00000474432 PFDN2Q9UHV9 154 aa13.37□□□□□ -0.27
COL7A1-209ENST00000474432 LINC00854A0A1B0GVQ3 168 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 OR4E1P0C645 316 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 ANXA7P20073 488 aaKnown RBP13.36□□□□□ -0.27
COL7A1-209ENST00000474432 PSMB3P49720 205 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 PAX9P55771 341 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 ZNF705AQ6ZN79 300 aaPredicted RBP13.36□□□□□ -0.27
COL7A1-209ENST00000474432 Q6ZTC4 211 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 ACOT7LQ6ZUV0 252 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 LINC00052Q96N35 136 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 CLUHP3Q96NS8 147 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 SLC25A32Q9H2D1 315 aa13.36□□□□□ -0.27
COL7A1-209ENST00000474432 DNAH6Q9C0G6 4158 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 CCNKO75909 580 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 RPP30P78346 268 aaKnown RBP13.35□□□□□ -0.27
COL7A1-209ENST00000474432 TRIQKQ629K1 86 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 FOXI2Q6ZQN5 318 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 OR8I2Q8N0Y5 310 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 ZNF709Q8N972 641 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 C20orf173Q96LM9 149 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 C1QTNF4Q9BXJ3 329 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 SLC45A2Q9UMX9 530 aa13.35□□□□□ -0.27
COL7A1-209ENST00000474432 STRAPQ9Y3F4 350 aaKnown RBP13.35□□□□□ -0.27
COL7A1-209ENST00000474432 ZNF98A6NK75 572 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 ZNF705FA8MVS1 300 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-209ENST00000474432 C11orf94C9JXX5 98 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 F6UB75 175 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 ISLRO14498 428 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 CFDP00746 253 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-209ENST00000474432 IGKV3-20P01619 116 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 ZNF705DP0CH99 300 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-209ENST00000474432 ZNF705BP0CI00 300 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-209ENST00000474432 IL7P13232 177 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 FXYD7P58549 80 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 NUTF2P61970 127 aaKnown RBP13.34□□□□□ -0.27
COL7A1-209ENST00000474432 C12orf74Q32Q52 190 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 TMEM144Q7Z5S9 345 aa13.34□□□□□ -0.27
COL7A1-209ENST00000474432 IGLL5B9A064 214 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 PLA2G10O15496 165 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 ID1P41134 155 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 TCTAP57738 103 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 COQ8AQ8NI60 647 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 PPP1R14BQ96C90 147 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 SMIM8Q96KF7 97 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 NEU1Q99519 415 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 PSENENQ9NZ42 101 aa13.33□□□□□ -0.28
COL7A1-209ENST00000474432 A0A0J9YX75 114 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 A8MTW9 85 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 ORM2P19652 201 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 INPP1P49441 399 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 TMEM14EPQ6UXP3 125 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 ZNF767PQ75MW2 155 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 BPIFCQ8NFQ6 507 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 C7orf50Q9BRJ6 194 aaKnown RBP13.32□□□□□ -0.28
COL7A1-209ENST00000474432 SCRT1Q9BWW7 348 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 SLC35B3Q9H1N7 401 aa13.32□□□□□ -0.28
COL7A1-209ENST00000474432 TRAV10A0A0B4J240 114 aa13.31□□□□□ -0.28
COL7A1-209ENST00000474432 SSSCA1O60232 199 aa13.31□□□□□ -0.28
COL7A1-209ENST00000474432 AKR1C1Q04828 323 aa13.31□□□□□ -0.28
COL7A1-209ENST00000474432 FAM78BQ5VT40 261 aa13.31□□□□□ -0.28
COL7A1-209ENST00000474432 MITD1Q8WV92 249 aa13.31□□□□□ -0.28
COL7A1-209ENST00000474432 RSG1Q9BU20 258 aa13.31□□□□□ -0.28
COL7A1-209ENST00000474432 SLC25A22Q9H936 323 aa13.31□□□□□ -0.28
COL7A1-209ENST00000474432 TRAV8-2A0A0B4J237 113 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 H3BRN7 92 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 IFNA21P01568 189 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 C4orf46Q504U0 113 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 AMTNQ6UX39 209 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 CYP2G1PQ6ZSU1 146 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 C1orf158Q8N1D5 194 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 ZBTB8BQ8NAP8 495 aaPredicted RBP13.3□□□□□ -0.28
COL7A1-209ENST00000474432 OR4B1Q8NGF8 309 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 OR1B1Q8NGR6 318 aa13.3□□□□□ -0.28
COL7A1-209ENST00000474432 RCL1Q9Y2P8 373 aaKnown RBP13.3□□□□□ -0.28
COL7A1-209ENST00000474432 IGHV4-4A0A075B6R2 117 aa13.29□□□□□ -0.28
COL7A1-209ENST00000474432 GALR1P47211 349 aa13.29□□□□□ -0.28
COL7A1-209ENST00000474432 MEOX2P50222 304 aa13.29□□□□□ -0.28
COL7A1-209ENST00000474432 PLP1P60201 277 aa13.29□□□□□ -0.28
COL7A1-209ENST00000474432 ARL16Q0P5N6 197 aa13.29□□□□□ -0.28
COL7A1-209ENST00000474432 IAH1Q2TAA2 248 aaPredicted RBP13.29□□□□□ -0.28
COL7A1-209ENST00000474432 SPATA31B1PQ5VZV4 182 aa13.29□□□□□ -0.28
COL7A1-209ENST00000474432 C16orf92Q96LL3 132 aa13.29□□□□□ -0.28
COL7A1-209ENST00000474432 CENPXA8MT69 81 aa13.28□□□□□ -0.28
COL7A1-209ENST00000474432 METTL15P1P0C7V9 234 aa13.28□□□□□ -0.28
COL7A1-209ENST00000474432 DLK1P80370 383 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms