RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 PFDN2Q9UHV9 154 aa12.67□□□□□ -0.38
SHH-205ENST00000472308 MRPS16Q9Y3D3 137 aaKnown RBP12.67□□□□□ -0.38
SHH-205ENST00000472308 TRAV26-1A0A087WT03 109 aa12.66□□□□□ -0.38
SHH-205ENST00000472308 SMR3BP02814 79 aaPredicted RBP12.66□□□□□ -0.38
SHH-205ENST00000472308 CDPF1Q6NVV7 123 aa12.66□□□□□ -0.38
SHH-205ENST00000472308 FAM219AQ8IW50 185 aa12.66□□□□□ -0.38
SHH-205ENST00000472308 GNPNAT1Q96EK6 184 aaPredicted RBP12.66□□□□□ -0.38
SHH-205ENST00000472308 ZNF503Q96F45 646 aa12.66□□□□□ -0.38
SHH-205ENST00000472308 C16orf92Q96LL3 132 aa12.66□□□□□ -0.38
SHH-205ENST00000472308 PTTG2Q9NZH5 202 aa12.66□□□□□ -0.38
SHH-205ENST00000472308 CACNG5Q9UF02 275 aa12.66□□□□□ -0.38
SHH-205ENST00000472308 TRAV12-2A0A075B6T6 113 aa12.65□□□□□ -0.38
SHH-205ENST00000472308 CEBPZOSA8MTT3 80 aa12.65□□□□□ -0.38
SHH-205ENST00000472308 ANKRD65E5RJM6 399 aa12.65□□□□□ -0.38
SHH-205ENST00000472308 LYZP61626 148 aa12.65□□□□□ -0.38
SHH-205ENST00000472308 B2MP61769 119 aa12.65□□□□□ -0.38
SHH-205ENST00000472308 SAMD13Q5VXD3 122 aa12.65□□□□□ -0.38
SHH-205ENST00000472308 OR8I2Q8N0Y5 310 aa12.65□□□□□ -0.38
SHH-205ENST00000472308 RXFP4Q8TDU9 374 aa12.65□□□□□ -0.38
SHH-205ENST00000472308 CDS2O95674 445 aa12.64□□□□□ -0.39
SHH-205ENST00000472308 KLF9Q13886 244 aaPredicted RBP12.64□□□□□ -0.39
SHH-205ENST00000472308 SNX29P2Q8IUI4 249 aa12.64□□□□□ -0.39
SHH-205ENST00000472308 CROCCP3Q8IVE0 287 aa12.64□□□□□ -0.39
SHH-205ENST00000472308 SLC25A32Q9H2D1 315 aa12.64□□□□□ -0.39
SHH-205ENST00000472308 COPZ2Q9P299 210 aa12.64□□□□□ -0.39
SHH-205ENST00000472308 A0A0J9YY99 117 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 ZFP92A6NM28 416 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 M6PRP20645 277 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 HOXA5P20719 270 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 RPS19P39019 145 aaKnown RBP12.63□□□□□ -0.39
SHH-205ENST00000472308 MEOX2P50222 304 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 OR5I1Q13606 314 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 GPR141Q7Z602 305 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 ARRDC1Q8N5I2 433 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 TMEM222Q9H0R3 208 aa12.63□□□□□ -0.39
SHH-205ENST00000472308 TIMM8BQ9Y5J9 83 aaPredicted RBP12.63□□□□□ -0.39
SHH-205ENST00000472308 J3QL48 77 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 ZNF701M0R085 212 aaPredicted RBP12.62□□□□□ -0.39
SHH-205ENST00000472308 OR5AC1P0C628 307 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 GAMTQ14353 236 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 MEF2DQ14814 521 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 IGFL4Q6B9Z1 124 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 OR13C8Q8NGS7 320 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 GLYATL2Q8WU03 294 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 C16orf74Q96GX8 76 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 SLC25A39Q9BZJ4 359 aaPredicted RBP12.62□□□□□ -0.39
SHH-205ENST00000472308 NOP10Q9NPE3 64 aaKnown RBP12.62□□□□□ -0.39
SHH-205ENST00000472308 DNAH8Q96JB1 4490 aa12.62□□□□□ -0.39
SHH-205ENST00000472308 TRAV8-2A0A0B4J237 113 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 BOLA2-SMG1P6H3BVE0 249 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 DUSP14O95147 198 aaKnown RBP12.61□□□□□ -0.39
SHH-205ENST00000472308 TAS2R60P59551 318 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 OR2F1Q13607 317 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 ICAM4Q14773 271 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 NOXA1Q86UR1 476 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 SELENOHQ8IZQ5 122 aaKnown RBP12.61□□□□□ -0.39
SHH-205ENST00000472308 LINC00612Q8N6U2 182 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 CCDC71LQ8N9Z2 235 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 RNASE8Q8TDE3 154 aaKnown RBP12.61□□□□□ -0.39
SHH-205ENST00000472308 RBPMSQ93062 196 aaKnown RBP12.61□□□□□ -0.39
SHH-205ENST00000472308 PPP1R14BQ96C90 147 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 LINC01587Q99440 93 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 RSG1Q9BU20 258 aa12.61□□□□□ -0.39
SHH-205ENST00000472308 B3GALNT1O75752 331 aa12.6□□□□□ -0.39
SHH-205ENST00000472308 CD3DP04234 171 aa12.6□□□□□ -0.39
SHH-205ENST00000472308 DNAH10OSP0CZ25 163 aa12.6□□□□□ -0.39
SHH-205ENST00000472308 ERVFC1-1P60608 527 aa12.6□□□□□ -0.39
SHH-205ENST00000472308 HAMPP81172 84 aa12.6□□□□□ -0.39
SHH-205ENST00000472308 RNASE10Q5GAN6 216 aaKnown RBP12.6□□□□□ -0.39
SHH-205ENST00000472308 RNF182Q8N6D2 247 aa12.6□□□□□ -0.39
SHH-205ENST00000472308 OR4D10Q8NGI6 311 aa12.6□□□□□ -0.39
SHH-205ENST00000472308 RAB26Q9ULW5 256 aa12.6□□□□□ -0.39
SHH-205ENST00000472308 SNRPGP15A8MWD9 76 aa12.59□□□□□ -0.39
SHH-205ENST00000472308 HTN1P15515 57 aa12.59□□□□□ -0.39
SHH-205ENST00000472308 GALR1P47211 349 aa12.59□□□□□ -0.39
SHH-205ENST00000472308 Q6ZSN1 163 aa12.59□□□□□ -0.39
SHH-205ENST00000472308 TMEM256Q8N2U0 113 aa12.59□□□□□ -0.39
SHH-205ENST00000472308 OR10J6PQ8NGY7 276 aa12.59□□□□□ -0.39
SHH-205ENST00000472308 VCX3BQ9H321 246 aa12.59□□□□□ -0.39
SHH-205ENST00000472308 TNFRSF18Q9Y5U5 241 aa12.59□□□□□ -0.39
SHH-205ENST00000472308 IGKV1OR2-108A0A075B7D4 117 aa12.58□□□□□ -0.4
SHH-205ENST00000472308 EREGO14944 169 aa12.58□□□□□ -0.4
SHH-205ENST00000472308 NEDD8Q15843 81 aa12.58□□□□□ -0.4
SHH-205ENST00000472308 RNASE12Q5GAN4 147 aaKnown RBP12.58□□□□□ -0.4
SHH-205ENST00000472308 TMEM144Q7Z5S9 345 aa12.58□□□□□ -0.4
SHH-205ENST00000472308 ZFAND1Q8TCF1 268 aa12.58□□□□□ -0.4
SHH-205ENST00000472308 MARCH1Q8TCQ1 289 aa12.58□□□□□ -0.4
SHH-205ENST00000472308 SLC25A22Q9H936 323 aa12.58□□□□□ -0.4
SHH-205ENST00000472308 U3KQ87 197 aa12.58□□□□□ -0.4
SHH-205ENST00000472308 TEX13DA0A0J9YY54 714 aaPredicted RBP12.57□□□□□ -0.4
SHH-205ENST00000472308 ZNF98A6NK75 572 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 H3BNG1 76 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 FAM229AH3BQW9 127 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 APOA1P02647 267 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 TMEM268Q5VZI3 342 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 LGI3Q8N145 548 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 TERB2Q8NHR7 220 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 TMEM263Q8WUH6 116 aaKnown RBP12.57□□□□□ -0.4
SHH-205ENST00000472308 SLC35E1Q96K37 410 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms