RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	HSPE1	P61604	102 aa	Known RBP	0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	TEX261	Q6UWH6	196 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	STAG3L4	Q8TBR4	150 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	PATE1	Q8WXA2	126 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	CHMP6	Q96FZ7	201 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	CDC42SE1	Q9NRR8	79 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044		U3KQ87	197 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	CCDC160	A6NGH7	325 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044		A8MWV9	139 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	TIMM17B	O60830	172 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	C1QB	P02746	253 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	HOXA6	P31267	233 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	CAPZB	P47756	277 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	PDZD9	Q8IXQ8	264 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	CLECL1	Q8IZS7	167 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	TMEM254	Q8TBM7	123 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	GPER1	Q99527	375 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	ARMC1	Q9NVT9	282 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	KDM6A	O15550	1401 aa	Predicted RBP	0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	MYO18A	Q92614	2054 aa	Known RBP	0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	MUC16	Q8WXI7	14507 aa		0.79	□□□□□ -2.28
PTCD3-209	ENST00000472044	SI	P14410	1827 aa		0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	CHD3	Q12873	2000 aa	Known RBP	0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	TAX1BP3	O14907	124 aa		0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	NDUFB3	O43676	98 aa		0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	GGCT	O75223	188 aa	Known RBP	0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	SNRNP200	O75643	2136 aa	Known RBP	0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	TMED2	Q15363	201 aa		0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	BCL2L15	Q5TBC7	163 aa		0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	CANT1	Q8WVQ1	401 aa		0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	C9orf16	Q9BUW7	83 aa		0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	OPTC	Q9UBM4	332 aa		0.78	□□□□□ -2.28
PTCD3-209	ENST00000472044	CNTRL	Q7Z7A1	2325 aa		0.77	□□□□□ -2.29
PTCD3-209	ENST00000472044	TCRBV4S1A1T	A0A5B7	111 aa		0.77	□□□□□ -2.29
PTCD3-209	ENST00000472044	HMGB3	O15347	200 aa	Known RBP	0.77	□□□□□ -2.29
PTCD3-209	ENST00000472044	CCL16	O15467	120 aa		0.77	□□□□□ -2.29
PTCD3-209	ENST00000472044	ROMO1	P60602	79 aa		0.77	□□□□□ -2.29
PTCD3-209	ENST00000472044	MRPS25	P82663	173 aa	Known RBP	0.77	□□□□□ -2.29
PTCD3-209	ENST00000472044	ARL5A	Q9Y689	179 aa		0.77	□□□□□ -2.29
PTCD3-209	ENST00000472044	ARHGEF11	O15085	1522 aa		0.77	□□□□□ -2.29
PTCD3-209	ENST00000472044	MYH2	Q9UKX2	1941 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	COL1A1	P02452	1464 aa	Predicted RBP	0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	MIA2	Q96PC5	1412 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	TRBV6-4	A0A1B0GX49	114 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044		M0R378	163 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	ZNF25	P17030	456 aa	Predicted RBP	0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	UBE2B	P63146	152 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	TAF1A	Q15573	450 aa	Predicted RBP	0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	FAM74A1	Q5RGS3	127 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	OR2T35	Q8NGX2	323 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	OR10K1	Q8NGX5	313 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	DGCR14	Q96DF8	476 aa	Known RBP	0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	TEX37	Q96LM6	180 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	AMELY	Q99218	206 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	SLC25A21	Q9BQT8	299 aa	Predicted RBP	0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	PTPRF	P10586	1907 aa		0.76	□□□□□ -2.29
PTCD3-209	ENST00000472044	CCL25	O15444	150 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	ARF6	P62330	175 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	MRPS15	P82914	257 aa	Known RBP	0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	MYL5	Q02045	173 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	KRTAP5-10	Q6L8G5	202 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	DHRS4L2	Q6PKH6	230 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	C2orf82	Q6UX34	121 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	ZNF833P	Q6ZTB9	187 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	ST6GALNAC3	Q8NDV1	305 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	PXT1	Q8NFP0	134 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	TP53RK	Q96S44	253 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	MYO5A	Q9Y4I1	1855 aa	Known RBP	0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	TRPM1	Q7Z4N2	1603 aa		0.75	□□□□□ -2.29
PTCD3-209	ENST00000472044	TMEM256-PLSCR3	K7ERE1	68 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	ATP5H	O75947	161 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	DSCR4	P56555	118 aa	Predicted RBP	0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	SPRN	Q5BIV9	151 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	KRTAP26-1	Q6PEX3	210 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	S100A7A	Q86SG5	101 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	BORCS5	Q969J3	196 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	PHB2	Q99623	299 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	PYCARD	Q9ULZ3	195 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	LY96	Q9Y6Y9	160 aa		0.74	□□□□□ -2.29
PTCD3-209	ENST00000472044	UNC13C	Q8NB66	2214 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	IGHV1-58	A0A0C4DH39	117 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044		E7EUB6	86 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	NUPR1	O60356	82 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	HLA-E	P13747	358 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	NCALD	P61601	193 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	PSG9	Q00887	426 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	C4orf22	Q6V702	233 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	LINC00322	Q6ZN03	302 aa	Predicted RBP	0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	LINC00052	Q96N35	136 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	ORMDL1	Q9P0S3	153 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	ZFC3H1	O60293	1989 aa	Known RBP	0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	NCAPD3	P42695	1498 aa		0.73	□□□□□ -2.29
PTCD3-209	ENST00000472044	PHRF1	Q9P1Y6	1649 aa	Known RBP	0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044		A0A087WSZ3	146 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044	TRAV10	A0A0B4J240	114 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044	DYNLT3	P51808	116 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044	GRINA	Q7Z429	371 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044		Q8N6K4	173 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044	OR5D14	Q8NGL3	314 aa		0.72	□□□□□ -2.29

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