RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 PLP2Q04941 152 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 LOXL1Q08397 574 aaPredicted RBP3.43□□□□□ -1.86
VPS50-210ENST00000471188 ZNF146Q15072 292 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 LGALS9BQ3B8N2 356 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 TMEM196Q5HYL7 178 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 LGALS9CQ6DKI2 356 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 ZNF562Q6V9R5 426 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 GTSCR1Q86UQ5 136 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.43□□□□□ -1.86
VPS50-210ENST00000471188 PPP1R35Q8TAP8 253 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 IFI27L1Q96BM0 104 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 KIR2DL4Q99706 377 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 GNG12Q9UBI6 72 aa3.43□□□□□ -1.86
VPS50-210ENST00000471188 PGPA6NDG6 321 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 FNDC10F2Z333 226 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 PLXNB1O43157 2135 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 COX7A2P2O60397 106 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 SNCGO76070 127 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 GRPP07492 148 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 LINC00271P0C7V0 271 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 PRB4P10163 310 aaPredicted RBP3.42□□□□□ -1.86
VPS50-210ENST00000471188 PRTN3P24158 256 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 MLANAQ16655 118 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 C12orf74Q32Q52 190 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 Q6AWC8 147 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 ZNF497Q6ZNH5 498 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 LINC00596Q86U02 117 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 CEND1Q8N111 149 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 RPRMLQ8N4K4 120 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 FADS6Q8N9I5 356 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 OR9G1Q8NH87 305 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 FLYWCH2Q96CP2 140 aaKnown RBP3.42□□□□□ -1.86
VPS50-210ENST00000471188 DEFB126Q9BYW3 111 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 TET2Q6N021 2002 aaPredicted RBP3.42□□□□□ -1.86
VPS50-210ENST00000471188 CELSR3Q9NYQ7 3312 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 TRBV25-1A0A075B6N4 114 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 IGKV2D-26A0A0A0MRZ7 120 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.42□□□□□ -1.86
VPS50-210ENST00000471188 A0A0J9YW62 118 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 M0QXV9 152 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 PRRG2O14669 202 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 IGHV3-48P01763 117 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 MYOD1P15172 320 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 EDDM3AQ14507 147 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 MORN5Q5VZ52 161 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 LINC00322Q6ZN03 302 aaPredicted RBP3.42□□□□□ -1.86
VPS50-210ENST00000471188 SLC22A18ASQ8N1D0 253 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 C1orf159Q96HA4 380 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 SLC25A33Q9BSK2 321 aa3.42□□□□□ -1.86
VPS50-210ENST00000471188 A0A1B0GUT8 65 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 TMEM30CPA0ZSE6 113 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 FABP5P3A8MUU1 101 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 SPINT2O43291 252 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 ZFAND5O76080 213 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 MOSP00540 346 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 HBDP02042 147 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 TFF1P04155 84 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 SP1P08047 785 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 YPEL5P62699 121 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 SLC25A53Q5H9E4 307 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 NFE4Q86UQ8 179 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 CXorf67Q86X51 503 aaPredicted RBP3.41□□□□□ -1.86
VPS50-210ENST00000471188 PDPNQ86YL7 162 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 SRSF12Q8WXF0 261 aaKnown RBP3.41□□□□□ -1.86
VPS50-210ENST00000471188 S1PR3Q99500 378 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 KRTAP9-9Q9BYP9 154 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 KRTAP9-4Q9BYQ2 154 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 SOX21Q9Y651 276 aaPredicted RBP3.41□□□□□ -1.86
VPS50-210ENST00000471188 PCNX2A6NKB5 2137 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 D6R8Y8 96 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 CXCL13O43927 109 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 IL4P05112 153 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 ARMS2P0C7Q2 107 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 DSCR4P56555 118 aaPredicted RBP3.41□□□□□ -1.86
VPS50-210ENST00000471188 FOXF2Q12947 444 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 RIGQ13278 110 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 FHL3Q13643 280 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 RRN3P1Q2M238 152 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 ZC2HC1BQ5TFG8 222 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 Q6P435 159 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 ZNF329Q86UD4 541 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 RBMXL3Q8N7X1 1067 aaKnown RBP3.41□□□□□ -1.86
VPS50-210ENST00000471188 SRXN1Q9BYN0 137 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 PPDPFQ9H3Y8 114 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 TMEM160Q9NX00 188 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 POLDIP2Q9Y2S7 368 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 TRAV8-1A0A0A6YYK1 113 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 TRAV8-2A0A0B4J237 113 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 PRSS46E5RG02 174 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 J3QT63 122 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 CXCL10P02778 98 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 ORM2P19652 201 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 FKBP2P26885 142 aaKnown RBP3.41□□□□□ -1.86
VPS50-210ENST00000471188 NDUFV3P56181 108 aaKnown RBP3.41□□□□□ -1.86
VPS50-210ENST00000471188 HOXA4Q00056 320 aaPredicted RBP3.41□□□□□ -1.86
VPS50-210ENST00000471188 SRYQ05066 204 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 DEFB133Q30KQ1 61 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 RPL39P5Q59GN2 51 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 MEIG1Q5JSS6 88 aa3.41□□□□□ -1.86
VPS50-210ENST00000471188 C10orf113Q5VZT2 155 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms