RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 MRPL36Q9P0J6 103 aaKnown RBP9.16□□□□□ -0.94
USP54-209ENST00000464635 WI2-2373I1.2A0A1W2PRP0 233 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 HYPMO75409 117 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 NDUFB8O95169 186 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 RD3LP0DJH9 198 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 TMEM95Q3KNT9 176 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 SOHLH1Q5JUK2 328 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 C10orf113Q5VZT2 155 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 OR51G1Q8NGK1 321 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 NARS2Q96I59 477 aaKnown RBP9.15□□□□□ -0.94
USP54-209ENST00000464635 MRPL27Q9P0M9 148 aaKnown RBP9.15□□□□□ -0.94
USP54-209ENST00000464635 GNG13Q9P2W3 67 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 FBXL7Q9UJT9 491 aa9.15□□□□□ -0.94
USP54-209ENST00000464635 A0A1W2PRE2 83 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 C9JQL5 133 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 F6UZH7 168 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 GNG7O60262 68 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 COX7A2P2O60397 106 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 ADCYAP1P18509 176 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 GCHFRP30047 84 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 RAB9AP51151 201 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 ZNF90Q03938 601 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 GCSAMLQ5JQS6 135 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 PATE2Q6UY27 113 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 Q8N2B8 174 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 ZNF502Q8TBZ5 544 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 Q8WTZ3 238 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 RARRES2Q99969 163 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 TMEM14CQ9P0S9 112 aa9.14□□□□□ -0.95
USP54-209ENST00000464635 A0A0G2JLM5 398 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 F8W735 103 aaPredicted RBP9.13□□□□□ -0.95
USP54-209ENST00000464635 G3V4G9 280 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 IGLV1-40P01703 118 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 APOC3P02656 99 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 ARL14EPLP0DKL9 152 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 APELAP0DMC3 54 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 CD28P10747 220 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 PSG1P11464 419 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 FGF8P55075 233 aaPredicted RBP9.13□□□□□ -0.95
USP54-209ENST00000464635 CFHR3Q02985 330 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 PNRC1Q12796 327 aaPredicted RBP9.13□□□□□ -0.95
USP54-209ENST00000464635 HAGHQ16775 308 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 ZNF491Q8N8L2 437 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 OR5T1Q8NG75 326 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 WIPF2Q8TF74 440 aaPredicted RBP9.13□□□□□ -0.95
USP54-209ENST00000464635 EEF1AKMT3Q96AZ1 226 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 FAM167A-AS1Q96KT0 104 aa9.13□□□□□ -0.95
USP54-209ENST00000464635 ADARB2-AS1A8MUL3 147 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 B4DEV8 164 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 NUPL2O15504 423 aaKnown RBP9.12□□□□□ -0.95
USP54-209ENST00000464635 CTSGP08311 255 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 GATA2P23769 480 aaPredicted RBP9.12□□□□□ -0.95
USP54-209ENST00000464635 CD81P60033 236 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 BLCAPP62952 87 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 NSUN5P1Q3KNT7 163 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 ZNF600Q6ZNG1 722 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 MIR17HGQ75NE6 70 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 LINC00305Q7Z4B0 112 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 RXFP4Q8TDU9 374 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 RPUSD4Q96CM3 377 aaKnown RBP9.12□□□□□ -0.95
USP54-209ENST00000464635 PRSS22Q9GZN4 317 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 TMEM231Q9H6L2 316 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 HIGD1AQ9Y241 93 aa9.12□□□□□ -0.95
USP54-209ENST00000464635 LINC01548A6NM66 108 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 OR2J3O76001 311 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 IGHG4P01861 327 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 RHOGP84095 191 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 ATP5G2Q06055 141 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 ECSCRQ19T08 205 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 C15orf32Q32M92 178 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 BEAN1Q3B7T3 259 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 ZNF343Q6P1L6 599 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 C19orf35Q6ZS72 473 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 ARL6IP6Q8N6S5 226 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 C11orf52Q96A22 123 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 ZNF503Q96F45 646 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 UHRF2Q96PU4 802 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 CITED2Q99967 270 aaPredicted RBP9.11□□□□□ -0.95
USP54-209ENST00000464635 OR51M1Q9H341 326 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 TUBA4BQ9H853 241 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 DOK5Q9P104 306 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 PRELID1Q9Y255 219 aa9.11□□□□□ -0.95
USP54-209ENST00000464635 FAM74A7A6NL05 159 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 C11orf94C9JXX5 98 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 G3V318 75 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 PAGE4O60829 102 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 PRB2P02812 416 aaPredicted RBP9.1□□□□□ -0.95
USP54-209ENST00000464635 RELQ04864 619 aaPredicted RBP9.1□□□□□ -0.95
USP54-209ENST00000464635 RHEBQ15382 184 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 TIGITQ495A1 244 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 Q56UQ5 140 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 SAMD5Q5TGI4 173 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 FAM90A2PQ658T7 463 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 LYPD1Q8N2G4 141 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 RNF125Q96EQ8 232 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 NIPSNAP3BQ9BS92 247 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 SHANK2-AS3Q9BTD1 123 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 PAXXQ9BUH6 204 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 SLC25A2Q9BXI2 301 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 TMPRSS5Q9H3S3 457 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms