RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PLSCR4Q9NRQ2 329 aa15.6■□□□□ 0.09
CCDC88B-204ENST00000463837 IL18BPO95998 194 aa15.6■□□□□ 0.09
CCDC88B-204ENST00000463837 SPACA3Q8IXA5 215 aa15.6■□□□□ 0.09
CCDC88B-204ENST00000463837 MBNL3Q9NUK0 354 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-204ENST00000463837 WDR81Q562E7 1941 aa15.59■□□□□ 0.09
CCDC88B-204ENST00000463837 TRAV3A0A0B4J244 114 aa15.59■□□□□ 0.09
CCDC88B-204ENST00000463837 TOMM40O96008 361 aa15.59■□□□□ 0.09
CCDC88B-204ENST00000463837 YAE1D1Q9NRH1 226 aa15.59■□□□□ 0.09
CCDC88B-204ENST00000463837 LAGE3Q14657 143 aa15.59■□□□□ 0.09
CCDC88B-204ENST00000463837 TMEM95Q3KNT9 176 aa15.59■□□□□ 0.09
CCDC88B-204ENST00000463837 A0A087X0K7 114 aa15.58■□□□□ 0.09
CCDC88B-204ENST00000463837 A0A1B0GWJ7 208 aa15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 CD59P13987 128 aa15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 C10orf55Q5SWW7 151 aa15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 TMEM101Q96IK0 257 aa15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 GUSBP1Q15486 140 aa15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 COX11Q9Y6N1 276 aa15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 D6R8Y8 96 aa15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 IFI27P40305 119 aaPredicted RBP15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 ZCCHC24Q8N2G6 241 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-204ENST00000463837 IGHV4-39P01824 125 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 NPFFR1Q9GZQ6 430 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 ZNF815PA8K554 130 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 A8MWV9 139 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 PAX9P55771 341 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 COLCA1Q6ZS62 124 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 PSG1P11464 419 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 CD24P25063 80 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 LYPD6BQ8NI32 183 aa15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 KLF2Q9Y5W3 355 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-204ENST00000463837 IGKV1-6A0A0C4DH72 117 aa15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 YPEL3P61236 119 aaPredicted RBP15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 C20orf204Q6ZNR8 217 aa15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 ZNF329Q86UD4 541 aa15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 KIR3DL3Q8N743 410 aa15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 ANAPC13Q9BS18 74 aa15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 OVOL1O14753 267 aa15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 FAM231BA6NCW3 169 aa15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 SNHG12Q9BXW3 62 aa15.56■□□□□ 0.08
CCDC88B-204ENST00000463837 NPIPB5A8MRT5 1133 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 H0YJW9 148 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 NCR2O95944 276 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 GTSCR1Q86UQ5 136 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 BCL6BQ8N143 479 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 RIF1Q5UIP0 2472 aaKnown RBP15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 SELLP14151 372 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 IL15RAQ13261 267 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 TPTE2P1Q5T6R2 138 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 PLNP26678 52 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 EXOC3-AS1Q8N2X6 119 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 ZNF492Q9P255 531 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 MMP23AO75900 390 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 FXYD7P58549 80 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 CT83Q5H943 113 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 GLMPQ8WWB7 406 aa15.55■□□□□ 0.08
CCDC88B-204ENST00000463837 PLXNA4Q9HCM2 1894 aa15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 PMS2P5A8MQ11 134 aa15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 RNASE2P10153 161 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 LYZL1Q6UWQ5 148 aa15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 PSG3Q16557 428 aa15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 KLF17Q5JT82 389 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 A0A1B0GUS0 222 aa15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 TIMM23O14925 209 aa15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 CDKN1AP38936 164 aa15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 METRNQ9UJH8 293 aa15.54■□□□□ 0.08
CCDC88B-204ENST00000463837 LINC00205P59089 165 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 SCRT1Q9BWW7 348 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 LILRA1O75019 489 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 ESDP10768 282 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 LIME1Q9H400 295 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 SCN5AQ14524 2016 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 ACACAQ13085 2346 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 RHOGP84095 191 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 TRAV2A0A0B4J234 112 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 IGHV3-11P01762 117 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 MYOD1P15172 320 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 TMEM200BQ69YZ2 307 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 VOPP1Q96AW1 172 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 PEMTQ9UBM1 199 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 PTPRDP23468 1912 aa15.53■□□□□ 0.08
CCDC88B-204ENST00000463837 IGHV2-26A0A0B4J1V2 119 aa15.52■□□□□ 0.08
CCDC88B-204ENST00000463837 IGHV1-8P0DP01 117 aa15.52■□□□□ 0.08
CCDC88B-204ENST00000463837 ZNF138P52744 262 aa15.52■□□□□ 0.08
CCDC88B-204ENST00000463837 GAGE1Q13065 139 aa15.52■□□□□ 0.08
CCDC88B-204ENST00000463837 ZNF726P1Q15940 193 aa15.52■□□□□ 0.08
CCDC88B-204ENST00000463837 TRAV12-3A0A0B4J271 114 aa15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 DSCR9P59020 149 aa15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 CD300EQ496F6 205 aaPredicted RBP15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 RNF182Q8N6D2 247 aa15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 MCRIP2Q9BUT9 160 aaKnown RBP15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 PRSS22Q9GZN4 317 aa15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 SLC25A15Q9Y619 301 aa15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 LMO1P25800 156 aa15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 SRSF8Q9BRL6 282 aaKnown RBP15.52■□□□□ 0.07
CCDC88B-204ENST00000463837 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 DUSP14O95147 198 aaKnown RBP15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 TOMM7Q9P0U1 55 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 OOSP1A8MZH6 123 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 THBDP07204 575 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms