RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ZNF433Q8N7K0 673 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 BPIFB6Q8NFQ5 453 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 STAG3L4Q8TBR4 150 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 SCGB3A1Q96QR1 104 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 BANF2Q9H503 90 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 OTORQ9NRC9 128 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 BAZ2AQ9UIF9 1905 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ATG2BQ96BY7 2078 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 COL3A1P02461 1466 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNFX1Q9P2E3 1918 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ITGB4P16144 1822 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A087WUU8 490 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TMEM256-PLSCR3K7ERE1 68 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 IGKV1D-33P01593 117 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 IGKV1-33P01594 117 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV1-69P01742 117 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 CXCL1P09341 107 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 FKBP2P26885 142 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 SPATA12Q7Z6I5 190 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 HIST1H2BLQ99880 126 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TTTY13Q9BZ97 58 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 CBLN4Q9NTU7 201 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 GCN1Q92616 2671 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ALS2Q96Q42 1657 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 PXDNQ92626 1479 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 RIF1Q5UIP0 2472 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TRGV10A0A0A0MS01 117 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TRAV13-1A0A0B4J241 112 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 H3BMG7 143 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 LY6G6DO95868 133 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 IGKV1-5P01602 117 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 GIG44P09565 113 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 FGF7P21781 194 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF80P51504 273 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 PSG7Q13046 419 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 DEFB116Q30KQ4 102 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 KHDC3LQ587J8 217 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 C18orf65Q6ZTR6 163 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF101Q8IZC7 436 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF664Q8N3J9 261 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 TCTEX1D1Q8N7M0 179 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 Q8N7P7 452 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 OR5D16Q8NGK9 328 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 FNDC9Q8TBE3 224 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 PPP3R2Q96LZ3 170 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 NPCDR1Q9BY65 106 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 XAGE1AQ9HD64 81 aa1.61□□□□□ -2.15
CCDC88A-208ENST00000444458 C1orf167Q5SNV9 1468 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 CASKIN1Q8WXD9 1431 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 J3QQQ9 107 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 SLC22A1O15245 554 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 IFNA4P05014 189 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 MPV17P39210 176 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 RPL35P42766 123 aaKnown RBP1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 LSM3P62310 102 aaKnown RBP1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 HSD17B12Q53GQ0 312 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 C10orf91Q5T1B1 145 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 GTF2H5Q6ZYL4 71 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 MIR17HGQ75NE6 70 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 LYZL2Q7Z4W2 148 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 OR5H6Q8NGV6 325 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 TERB2Q8NHR7 220 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 FGF13Q92913 245 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 EPDR1Q9UM22 224 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 SCN4AP35499 1836 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 ARHGAP5Q13017 1502 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 DUOX2Q9NRD8 1548 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 MYH10P35580 1976 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 VPS8Q8N3P4 1428 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 LOC107984640A0A0U1RRK4 108 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 BUB1B-PAK6H3BSN5 160 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 NDUFB3O43676 98 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 IGKV3-20P01619 116 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 GPX1P07203 203 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 CRHBPP24387 322 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 VEGFCP49767 419 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 INSL3P51460 131 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 WNT4P56705 351 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 HBBP68871 147 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 SP6Q3SY56 376 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 DEFB128Q7Z7B8 93 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 SAXO1Q8IYX7 474 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 RNASE6Q93091 150 aaKnown RBP1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 B9D2Q9BPU9 175 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 NIT2Q9NQR4 276 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 NAIPQ13075 1403 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 MYO5BQ9ULV0 1848 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 SVILO95425 2214 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 NBASA2RRP1 2371 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 KNDC1Q76NI1 1749 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 A8MWP4 228 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 H7BYZ3 331 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 NDUFB2O95178 105 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 AKAIN1P0CW23 69 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 DYNLT3P51808 116 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 ARPP19P56211 112 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 GNG2P59768 71 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 MAXP61244 160 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 NTM-AS1Q6ZSK4 140 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms