RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FAM106AQ4KMX7 169 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 FAM201AQ5SY85 155 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 SAMD13Q5VXD3 122 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 RUSC1-AS1Q66K80 236 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 MOGAT3Q86VF5 341 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 TMEM116Q8NCL8 245 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 TNFRSF14Q92956 283 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 ABHD17AQ96GS6 310 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 HARBI1Q96MB7 349 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 LINC00574Q9H8X3 128 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 TRAV8-1A0A0A6YYK1 113 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 A0A1B0GUT8 65 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 ZNF785A8K8V0 405 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 PATE3B3GLJ2 98 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 C22orf46C9J442 243 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 M0R296 226 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 ARMS2P0C7Q2 107 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 LGALS9BQ3B8N2 356 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 LGALS9CQ6DKI2 356 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 FA2HQ7L5A8 372 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 RPRMLQ8N4K4 120 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 TMEM105Q8N8V8 129 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 RAB37Q96AX2 223 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 ZNF576Q9H609 170 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 THYN1Q9P016 225 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 INSIG2Q9Y5U4 225 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 H3BTX0 84 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 IGLV2-11P01706 119 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 LOXL1Q08397 574 aaPredicted RBP8.56□□□□□ -1.04
USP54-204ENST00000422491 C10orf55Q5SWW7 151 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 ZNF833PQ6ZTB9 187 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 OR4X2Q8NGF9 303 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 PRSS3P2Q8NHM4 247 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 RPUSD1Q9UJJ7 312 aaKnown RBP8.56□□□□□ -1.04
USP54-204ENST00000422491 IGHV1-18A0A0C4DH31 117 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 PLP1P60201 277 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 NHLH1Q02575 133 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 OR8A1Q8NGG7 326 aa8.56□□□□□ -1.04
USP54-204ENST00000422491 MRPL20Q9BYC9 149 aaKnown RBP8.56□□□□□ -1.04
USP54-204ENST00000422491 NDUFS8O00217 210 aa8.55□□□□□ -1.04
USP54-204ENST00000422491 GOSR1O95249 250 aa8.55□□□□□ -1.04
USP54-204ENST00000422491 HOXB4P17483 251 aaPredicted RBP8.55□□□□□ -1.04
USP54-204ENST00000422491 IFI27P40305 119 aaPredicted RBP8.55□□□□□ -1.04
USP54-204ENST00000422491 ZADH2Q8N4Q0 377 aa8.55□□□□□ -1.04
USP54-204ENST00000422491 C1orf162Q8NEQ5 155 aaPredicted RBP8.55□□□□□ -1.04
USP54-204ENST00000422491 GUCD1Q96NT3 240 aa8.55□□□□□ -1.04
USP54-204ENST00000422491 MEF2CQ06413 473 aaPredicted RBP8.55□□□□□ -1.04
USP54-204ENST00000422491 RIGQ13278 110 aa8.55□□□□□ -1.04
USP54-204ENST00000422491 TMEM167AQ8TBQ9 72 aa8.55□□□□□ -1.04
USP54-204ENST00000422491 hADV38S2A0JD32 116 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 TMEM189A5PLL7 270 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 GNG7O60262 68 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 SUB1P53999 127 aaKnown RBP eCLIP8.54□□□□□ -1.04
USP54-204ENST00000422491 TCTAP57738 103 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 CACNG7P62955 275 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 SSUH2Q9Y2M2 353 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 ARFGEF3Q5TH69 2177 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 TEX48A0A1B0GUV7 120 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 CRYGCP07315 174 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 SCGB1A1P11684 91 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 FABP2P12104 132 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 PCP2Q8IVA1 136 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 CNEP1R1Q8N9A8 125 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 SVIPQ8NHG7 77 aa8.54□□□□□ -1.04
USP54-204ENST00000422491 IGFBP4P22692 258 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 KIR2DL2P43627 348 aaPredicted RBP8.53□□□□□ -1.04
USP54-204ENST00000422491 TMEM30BQ3MIR4 351 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 PRSS57Q6UWY2 283 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 PRNTQ86SH4 94 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 SRSF12Q8WXF0 261 aaKnown RBP8.53□□□□□ -1.04
USP54-204ENST00000422491 GAFA1Q96PS6 74 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 TRGV9Q99603 122 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 COL25A1Q9BXS0 654 aaPredicted RBP8.53□□□□□ -1.04
USP54-204ENST00000422491 HEATR1Q9H583 2144 aaKnown RBP8.53□□□□□ -1.04
USP54-204ENST00000422491 SIGLEC8Q9NYZ4 499 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 SMPXQ9UHP9 88 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 TRIOBPQ9H2D6 2365 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 URB1O60287 2271 aaKnown RBP8.53□□□□□ -1.04
USP54-204ENST00000422491 PPIAL4CA0A0B4J2A2 164 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 A0A1B0GW15 77 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 PAX8Q06710 450 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 SAMD5Q5TGI4 173 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 FLYWCH2Q96CP2 140 aaKnown RBP8.53□□□□□ -1.04
USP54-204ENST00000422491 OTORQ9NRC9 128 aa8.53□□□□□ -1.04
USP54-204ENST00000422491 RAI1Q7Z5J4 1906 aaPredicted RBP8.53□□□□□ -1.04
USP54-204ENST00000422491 PPIAL4EA0A075B759 164 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 TRBV6-1A0A0K0K1D8 114 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 A0A1W2PPI3 338 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 TM4SF5O14894 197 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 PPIAL4FP0DN26 164 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 AZU1P20160 251 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 ZNF493Q6ZR52 646 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 GOLT1AQ6ZVE7 132 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 DKK4Q9UBT3 224 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 TIMM23BQ5SRD1 257 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 PVRIGQ6DKI7 326 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 FAM216BQ8N7L0 139 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 C8orf46Q8TAG6 207 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 U3KQK5 164 aa8.52□□□□□ -1.05
USP54-204ENST00000422491 D6R8Y8 96 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms