RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CDC34P49427 236 aaPredicted RBP4.81□□□□□ -1.64
USP40-202ENST00000409945 AP2S1P53680 142 aaPredicted RBP4.81□□□□□ -1.64
USP40-202ENST00000409945 TPPP2P59282 170 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 ZNF616Q08AN1 781 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 C9orf66Q5T8R8 295 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 AADACL3Q5VUY0 350 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 GSG1LQ6UXU4 331 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 LFNGQ8NES3 379 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 CASTOR1Q8WTX7 329 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 PPP1R1CQ8WVI7 109 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 CYYR1Q96J86 154 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 KRTAP2-2Q9BYT5 123 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 TMEM231Q9H6L2 316 aa4.81□□□□□ -1.64
USP40-202ENST00000409945 TECRQ9NZ01 308 aaKnown RBP4.81□□□□□ -1.64
USP40-202ENST00000409945 TRAV14DV4A0A0A6YYC5 116 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 A0A1W2PPV4 95 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 KANTRA0A1W2PQU2 76 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 RBFOX2O43251 390 aaKnown RBP eCLIP4.8□□□□□ -1.64
USP40-202ENST00000409945 HPRT1P00492 218 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 TRGV3P03979 118 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 PET100P0DJ07 73 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 PGAM2P15259 253 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 IGLL1P15814 213 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 INSL3P51460 131 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 C14orf177Q52M58 125 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 OR2B11Q5JQS5 317 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 ACOT7LQ6ZUV0 252 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 SPAG16Q8N0X2 631 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 KCNRGQ8N5I3 272 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 ZNF491Q8N8L2 437 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 INO80EQ8NBZ0 244 aaPredicted RBP4.8□□□□□ -1.64
USP40-202ENST00000409945 OR11H1Q8NG94 326 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 OR1N2Q8NGR9 330 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 OR4A5Q8NH83 315 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 ZNF2Q9BSG1 426 aaPredicted RBP4.8□□□□□ -1.64
USP40-202ENST00000409945 MED9Q9NWA0 146 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 COA4Q9NYJ1 87 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 MDFICQ9P1T7 246 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 TNFSF18Q9UNG2 199 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 NOTCH1P46531 2555 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 MEGF8Q7Z7M0 2845 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 PLXNB1O43157 2135 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 A0A0U1RRA0 63 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 LINC01619G3V211 115 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 FCN1O00602 326 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 CCSO14618 274 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 RAMP3O60896 148 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 ATG12O94817 140 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 CFDP00746 253 aaPredicted RBP4.8□□□□□ -1.64
USP40-202ENST00000409945 CTSDP07339 412 aaPredicted RBP4.8□□□□□ -1.64
USP40-202ENST00000409945 NQO2P16083 231 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 PSMB6P28072 239 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 HERV-K104P63124 156 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 RUNX1Q01196 453 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 PRSS8Q16651 343 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 Q6ZTC4 211 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 SGPP2Q8IWX5 399 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 TMEM230Q96A57 120 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 PHYHIPLQ96FC7 376 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 USMG5Q96IX5 58 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 RTBDNQ9BSG5 229 aaPredicted RBP4.8□□□□□ -1.64
USP40-202ENST00000409945 FAM103A1Q9BTL3 118 aaKnown RBP4.8□□□□□ -1.64
USP40-202ENST00000409945 COMMD5Q9GZQ3 224 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 CCL28Q9NRJ3 127 aa4.8□□□□□ -1.64
USP40-202ENST00000409945 IGKV1D-13A0A0B4J2D9 117 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 FAM223BA6NKX1 122 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 GPR31O00270 319 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 TNFSF12O43508 249 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 BCL2L11O43521 198 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 KBTBD11O94819 623 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 NXPH4O95158 308 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 HSPB1P04792 205 aaKnown RBP4.79□□□□□ -1.64
USP40-202ENST00000409945 LGALS1P09382 135 aaKnown RBP4.79□□□□□ -1.64
USP40-202ENST00000409945 OR9G9P0C7N8 305 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 SAA1P0DJI8 122 aaPredicted RBP4.79□□□□□ -1.64
USP40-202ENST00000409945 IGKV1-13P0DP09 117 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 ZP3P21754 424 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 RPL27AP46776 148 aaKnown RBP4.79□□□□□ -1.64
USP40-202ENST00000409945 RPL8P62917 257 aaKnown RBP4.79□□□□□ -1.64
USP40-202ENST00000409945 SUPT4H1P63272 117 aaKnown RBP4.79□□□□□ -1.64
USP40-202ENST00000409945 ANKRD55Q3KP44 614 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 KPRPQ5T749 579 aaPredicted RBP4.79□□□□□ -1.64
USP40-202ENST00000409945 FAM223AQ8IWN6 122 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 SLC38A6Q8IZM9 456 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 OR5T1Q8NG75 326 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 OR51H1Q8NH63 302 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 MRAPQ8TCY5 172 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 SRSF12Q8WXF0 261 aaKnown RBP4.79□□□□□ -1.64
USP40-202ENST00000409945 SEC22AQ96IW7 307 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 C2orf50Q96LR7 162 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 P2RX4Q99571 388 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 THYN1Q9P016 225 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 KCNIP3Q9Y2W7 256 aa4.79□□□□□ -1.64
USP40-202ENST00000409945 PUS1Q9Y606 427 aaKnown RBP eCLIP4.79□□□□□ -1.64
USP40-202ENST00000409945 NOTCH3Q9UM47 2321 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 CRYM-AS1A6NIL9 109 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 SEC14L6B5MCN3 397 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 OVOL1O14753 267 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 IFNA21P01568 189 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 IGLV2-23P01705 113 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms