RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 FABP1P07148 127 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 CSN3P07498 182 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 RD3LP0DJH9 198 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 CXCL2P19875 107 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 CRYBB3P26998 211 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 NUP62P37198 522 aaPredicted RBP6.95□□□□□ -1.3
VPS53-203ENST00000401468 RPL29P47914 159 aaKnown RBP6.95□□□□□ -1.3
VPS53-203ENST00000401468 SYNJ2BPP57105 145 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 OPCMLQ14982 345 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 BTNL8Q6UX41 500 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 ADAMTSL5Q6ZMM2 481 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 TMEM182Q6ZP80 229 aaPredicted RBP6.95□□□□□ -1.3
VPS53-203ENST00000401468 CYP2G1PQ6ZSU1 146 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 OR51G1Q8NGK1 321 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 MARC2Q969Z3 335 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 HYLS1Q96M11 299 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 GGTLC1Q9BX51 225 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 NPCDR1Q9BY65 106 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 MFFQ9GZY8 342 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 ARV1Q9H2C2 271 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 DAZ1Q9NQZ3 744 aaKnown RBP6.95□□□□□ -1.3
VPS53-203ENST00000401468 ZC4H2Q9NQZ6 224 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 UFC1Q9Y3C8 167 aa6.95□□□□□ -1.3
VPS53-203ENST00000401468 PUS1Q9Y606 427 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS53-203ENST00000401468 RYR2Q92736 4967 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 A0A0D9SG52 128 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 UBE2L5PA0A1B0GUS4 154 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 C2orf70A6NJV1 201 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 AGPAT2O15120 278 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 SAP30O75446 220 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 LINC00869P0C866 280 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 ZNF266Q14584 549 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 CLINT1Q14677 625 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 USF2Q15853 346 aaPredicted RBP6.94□□□□□ -1.3
VPS53-203ENST00000401468 LGALSLQ3ZCW2 172 aaPredicted RBP6.94□□□□□ -1.3
VPS53-203ENST00000401468 PXDC1Q5TGL8 231 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 Q8WTZ3 238 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 RNF125Q96EQ8 232 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 B9D2Q9BPU9 175 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 MCRIP2Q9BUT9 160 aaKnown RBP6.94□□□□□ -1.3
VPS53-203ENST00000401468 CYTL1Q9NRR1 136 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 MRPL27Q9P0M9 148 aaKnown RBP6.94□□□□□ -1.3
VPS53-203ENST00000401468 PEMTQ9UBM1 199 aa6.94□□□□□ -1.3
VPS53-203ENST00000401468 STAB2Q8WWQ8 2551 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 PCLOQ9Y6V0 5065 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 IGHV3-35A0A0C4DH35 117 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 SMCO3A2RU48 225 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 IL4P05112 153 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 FGF7P21781 194 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 CBLN1P23435 193 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 CAMLGP49069 296 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 EIF2B2P49770 351 aaKnown RBP6.93□□□□□ -1.3
VPS53-203ENST00000401468 INSL3P51460 131 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 RAB31Q13636 194 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 C9orf66Q5T8R8 295 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 LAMTOR1Q6IAA8 161 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 C9orf62Q8N4C0 152 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 STPG3Q8N7X2 389 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 BPIFCQ8NFQ6 507 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 GINS3Q9BRX5 216 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 VSIRQ9H7M9 311 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 TIMM9Q9Y5J7 89 aa6.93□□□□□ -1.3
VPS53-203ENST00000401468 IGHV7-4-1A0A0J9YVY3 117 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 BCL2L11O43521 198 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 JTBO76095 146 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 IGLV1-51P01701 117 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 GATA2P23769 480 aaPredicted RBP6.92□□□□□ -1.3
VPS53-203ENST00000401468 AP2S1P53680 142 aaPredicted RBP6.92□□□□□ -1.3
VPS53-203ENST00000401468 ZFP69Q49AA0 526 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 TM4SF20Q53R12 229 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 RPL7L1Q6DKI1 246 aaKnown RBP6.92□□□□□ -1.3
VPS53-203ENST00000401468 OR2K2Q8NGT1 345 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 OR2G3Q8NGZ4 309 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 PSMG3Q9BT73 122 aaPredicted RBP6.92□□□□□ -1.3
VPS53-203ENST00000401468 SMIM3Q9BZL3 60 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 KCNIP2Q9NS61 270 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 TECRQ9NZ01 308 aaKnown RBP6.92□□□□□ -1.3
VPS53-203ENST00000401468 SMPXQ9UHP9 88 aa6.92□□□□□ -1.3
VPS53-203ENST00000401468 TENM2Q9NT68 2774 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 CHEK1O14757 476 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 RGS13O14921 159 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 BUB3O43684 328 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 YIF1AO95070 293 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 IFNA5P01569 189 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 HNRNPCP07910 306 aaKnown RBP eCLIP6.91□□□□□ -1.31e-6■■□□□ 11.4
VPS53-203ENST00000401468 FOLR2P14207 255 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 EDN2P20800 178 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 MIC13Q5XKP0 118 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 FAM90A2PQ658T7 463 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 PATE2Q6UY27 113 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 TMUB2Q71RG4 321 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 STOML3Q8TAV4 291 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 GLMPQ8WWB7 406 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 TMEM37Q8WXS4 190 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 METTL26Q96S19 204 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 ARPC5LQ9BPX5 153 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 ELOVL1Q9BW60 279 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 KRTAP4-2Q9BYR5 136 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 GPR61Q9BZJ8 451 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 SLC39A9Q9NUM3 307 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms