RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 IGLV2-23P01705 113 aa13.03□□□□□ -0.32
NKX3-1-201ENST00000380871 SLC25A5P05141 298 aaKnown RBP13.03□□□□□ -0.32
NKX3-1-201ENST00000380871 COX19Q49B96 90 aa13.03□□□□□ -0.32
NKX3-1-201ENST00000380871 GRAMD2BQ96HH9 432 aa13.03□□□□□ -0.32
NKX3-1-201ENST00000380871 ALKBH7Q9BT30 221 aaPredicted RBP13.03□□□□□ -0.32
NKX3-1-201ENST00000380871 SIAH2O43255 324 aa13.03□□□□□ -0.32
NKX3-1-201ENST00000380871 TMEM177Q53S58 311 aa13.03□□□□□ -0.32
NKX3-1-201ENST00000380871 URB1-AS1Q96HZ7 61 aa13.03□□□□□ -0.32
NKX3-1-201ENST00000380871 PGPA6NDG6 321 aa13.02□□□□□ -0.32
NKX3-1-201ENST00000380871 TCF21O43680 179 aa13.02□□□□□ -0.32
NKX3-1-201ENST00000380871 TOX4O94842 621 aa13.02□□□□□ -0.32
NKX3-1-201ENST00000380871 LOXP28300 417 aaPredicted RBP13.02□□□□□ -0.32
NKX3-1-201ENST00000380871 CACNA1BQ00975 2339 aa13.02□□□□□ -0.32
NKX3-1-201ENST00000380871 OR4C13Q8NGP0 309 aa13.02□□□□□ -0.33
NKX3-1-201ENST00000380871 TMEM167AQ8TBQ9 72 aa13.02□□□□□ -0.33
NKX3-1-201ENST00000380871 ST6GALNAC6Q969X2 333 aa13.02□□□□□ -0.33
NKX3-1-201ENST00000380871 UBE2G1P62253 170 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 WIPF2Q8TF74 440 aaPredicted RBP13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 ZNF835Q9Y2P0 537 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 CNTFRP26992 372 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 BPIFB3P59826 476 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 LINC00173Q6ZV60 143 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 FAM231DQ6ZW35 169 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 PDPNQ86YL7 162 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 MRPL27Q9P0M9 148 aaKnown RBP13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 ZFP30Q9Y2G7 519 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 TSPOP30536 169 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 APOBEC3AP31941 199 aaPredicted RBP13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 MYCNOSP40205 109 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 MRGPRG-AS1Q2M3A8 158 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 MUC15Q8N387 334 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 OR1L4Q8NGR5 311 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 ASCL2Q99929 193 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 EPDR1Q9UM22 224 aa13.01□□□□□ -0.33
NKX3-1-201ENST00000380871 ATP5IP56385 69 aaPredicted RBP13□□□□□ -0.33
NKX3-1-201ENST00000380871 UNQ5815/PRO19632Q6UWF5 114 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 GTSF1Q8WW33 167 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 JKAMPQ9P055 326 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 TRAV8-1A0A0A6YYK1 113 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 IGLL1P15814 213 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 ZNF137PP52743 207 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 C2orf70A6NJV1 201 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 PGLYRP4Q96LB8 373 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 OR8B2Q96RD0 313 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 VKORC1Q9BQB6 163 aa13□□□□□ -0.33
NKX3-1-201ENST00000380871 MEF2CQ06413 473 aaPredicted RBP12.99□□□□□ -0.33
NKX3-1-201ENST00000380871 SSUH2Q9Y2M2 353 aa12.99□□□□□ -0.33
NKX3-1-201ENST00000380871 HIST1H1EP10412 219 aaKnown RBP12.99□□□□□ -0.33
NKX3-1-201ENST00000380871 THAP8Q8NA92 274 aa12.99□□□□□ -0.33
NKX3-1-201ENST00000380871 MCRIP2Q9BUT9 160 aaKnown RBP12.99□□□□□ -0.33
NKX3-1-201ENST00000380871 A0A1B0GXF2 115 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 SSX8Q7RTT4 187 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 OR8B3Q8NGG8 313 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 ONECUT1Q9UBC0 465 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 WASHC3Q9Y3C0 194 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 IGLC7A0M8Q6 106 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 NBEAP1P0C6P0 100 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 LINC00614P0C842 121 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 LY6DQ14210 128 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 C21orf62-AS1Q17RA5 79 aa12.98□□□□□ -0.33
NKX3-1-201ENST00000380871 ZNF138P52744 262 aa12.97□□□□□ -0.33
NKX3-1-201ENST00000380871 KLF5Q13887 457 aaPredicted RBP12.97□□□□□ -0.33
NKX3-1-201ENST00000380871 ERASQ7Z444 233 aa12.97□□□□□ -0.33
NKX3-1-201ENST00000380871 OR2J3O76001 311 aa12.97□□□□□ -0.33
NKX3-1-201ENST00000380871 IGHV1-8P0DP01 117 aa12.97□□□□□ -0.33
NKX3-1-201ENST00000380871 FAM120AOSQ5T036 256 aa12.97□□□□□ -0.33
NKX3-1-201ENST00000380871 RASL11AQ6T310 242 aa12.97□□□□□ -0.33
NKX3-1-201ENST00000380871 SUB1P53999 127 aaKnown RBP eCLIP12.96□□□□□ -0.33
NKX3-1-201ENST00000380871 KLHDC1Q8N7A1 406 aa12.96□□□□□ -0.33
NKX3-1-201ENST00000380871 VSTM2AQ8TAG5 236 aa12.96□□□□□ -0.33
NKX3-1-201ENST00000380871 GPR82Q96P67 336 aa12.96□□□□□ -0.33
NKX3-1-201ENST00000380871 INS-IGF2F8WCM5 200 aa12.96□□□□□ -0.33
NKX3-1-201ENST00000380871 TMEM30BQ3MIR4 351 aa12.96□□□□□ -0.33
NKX3-1-201ENST00000380871 MLST8Q9BVC4 326 aa12.96□□□□□ -0.33
NKX3-1-201ENST00000380871 RPP21Q9H633 154 aaKnown RBP12.96□□□□□ -0.33
NKX3-1-201ENST00000380871 TRAV9-2A0A087WT02 112 aa12.96□□□□□ -0.34
NKX3-1-201ENST00000380871 B9A039 149 aa12.96□□□□□ -0.34
NKX3-1-201ENST00000380871 PERPQ96FX8 193 aa12.96□□□□□ -0.34
NKX3-1-201ENST00000380871 RBM14Q96PK6 669 aaKnown RBP12.96□□□□□ -0.34
NKX3-1-201ENST00000380871 MSRB2Q9Y3D2 182 aa12.96□□□□□ -0.34
NKX3-1-201ENST00000380871 CCL25O15444 150 aa12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 GP9P14770 177 aa12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 ARF6P62330 175 aa12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 HBBP68871 147 aa12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 PLGLAQ15195 96 aa12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 CIARTQ8N365 385 aaPredicted RBP12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 Q9H3A6 140 aa12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 TMEM155Q4W5P6 130 aa12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 TIMM8BQ9Y5J9 83 aaPredicted RBP12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 INSIG2Q9Y5U4 225 aa12.95□□□□□ -0.34
NKX3-1-201ENST00000380871 EXOC3-AS1Q8N2X6 119 aa12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 OR4F17Q8NGA8 305 aa12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 HILPDAQ9Y5L2 63 aa12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 hDV102S1A0JD36 115 aa12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 H0Y8G0 127 aa12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 P01737 135 aa12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 ZNF672Q499Z4 452 aaPredicted RBP12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 TMEM186Q96B77 213 aa12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 TMEM133Q9H2Q1 129 aa12.94□□□□□ -0.34
NKX3-1-201ENST00000380871 ASH1LQ9NR48 2969 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms