RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 E5RGE8 158 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 LINC00869P0C866 280 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 NHLH2Q02577 135 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 SIGLEC15Q6ZMC9 328 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 STX12Q86Y82 276 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 OR11H7Q8NGC8 314 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 OR1B1Q8NGR6 318 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 DCANP1Q8TF63 244 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 MGST2Q99735 147 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 RNF126Q9BV68 326 aa9.92□□□□□ -0.82
VPS28-202ENST00000377348 HELTA6NFD8 242 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 K7EQG2 157 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 AGPAT2O15120 278 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 MPC2O95563 127 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 CFDP00746 253 aaPredicted RBP9.91□□□□□ -0.82
VPS28-202ENST00000377348 S100A11P31949 105 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 DEFB131AP59861 70 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 EWSR1Q01844 656 aaKnown RBP eCLIP9.91□□□□□ -0.82
VPS28-202ENST00000377348 OXA1LQ15070 435 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 TM2D3Q9BRN9 247 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 MED28Q9H204 178 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 RETNQ9HD89 108 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 UQCC1Q9NVA1 299 aa9.91□□□□□ -0.82
VPS28-202ENST00000377348 TRAV2A0A0B4J234 112 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 UBE2L5PA0A1B0GUS4 154 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 ZNF688P0C7X2 276 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 NUP62P37198 522 aaPredicted RBP9.9□□□□□ -0.82
VPS28-202ENST00000377348 SELENOTP62341 195 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 HBG1P69891 147 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 HBG2P69892 147 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 VWC2Q2TAL6 325 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 LEMD1Q68G75 181 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 FAM110AQ9BQ89 295 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 TMEM147Q9BVK8 224 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 GGTLC1Q9BX51 225 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 SLC25A22Q9H936 323 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 PFDN2Q9UHV9 154 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 SLC45A2Q9UMX9 530 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 U3KQK5 164 aa9.9□□□□□ -0.82
VPS28-202ENST00000377348 LOC102724200A0A096LPH7 203 aaPredicted RBP9.89□□□□□ -0.83
VPS28-202ENST00000377348 ZNF98A6NK75 572 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 OR5G3P0C626 314 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 RPL35AP18077 110 aaKnown RBP9.89□□□□□ -0.83
VPS28-202ENST00000377348 CAMLGP49069 296 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 AP2S1P53680 142 aaPredicted RBP9.89□□□□□ -0.83
VPS28-202ENST00000377348 BAXQ07812 192 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 PATE2Q6UY27 113 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 ZNF546Q86UE3 836 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 OR8I2Q8N0Y5 310 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 OR5C1Q8NGR4 320 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 RCHY1Q96PM5 261 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 UHRF2Q96PU4 802 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 SCRT1Q9BWW7 348 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 SLC25A39Q9BZJ4 359 aaPredicted RBP9.89□□□□□ -0.83
VPS28-202ENST00000377348 SLC25A31Q9H0C2 315 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 ARL6Q9H0F7 186 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 SLC25A32Q9H2D1 315 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 ZMAT4Q9H898 229 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 NRN1Q9NPD7 142 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 MBD2Q9UBB5 411 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 HIGD1AQ9Y241 93 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 WDR83OSQ9Y284 106 aa9.89□□□□□ -0.83
VPS28-202ENST00000377348 H3BRN7 92 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 HYPMO75409 117 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 FGF7P21781 194 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 CMC4P56277 68 aaPredicted RBP9.88□□□□□ -0.83
VPS28-202ENST00000377348 PLP1P60201 277 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 RAP2BP61225 183 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 CLINT1Q14677 625 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 ATP6V1FQ16864 119 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 C1orf194Q5T5A4 169 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 MIC13Q5XKP0 118 aa9.88□□□□□ -0.83
VPS28-202ENST00000377348 PET100P0DJ07 73 aa9.87□□□□□ -0.83
VPS28-202ENST00000377348 PSMG4Q5JS54 123 aa9.87□□□□□ -0.83
VPS28-202ENST00000377348 THAP6Q8TBB0 222 aa9.87□□□□□ -0.83
VPS28-202ENST00000377348 C17orf77Q96MU5 243 aa9.87□□□□□ -0.83
VPS28-202ENST00000377348 SPATA25Q9BR10 227 aa9.87□□□□□ -0.83
VPS28-202ENST00000377348 SHANK2-AS3Q9BTD1 123 aa9.87□□□□□ -0.83
VPS28-202ENST00000377348 ARV1Q9H2C2 271 aa9.87□□□□□ -0.83
VPS28-202ENST00000377348 FBXL17Q9UF56 701 aa9.87□□□□□ -0.83
VPS28-202ENST00000377348 KNCNA6PVL3 124 aa9.86□□□□□ -0.83
VPS28-202ENST00000377348 RPL12P30050 165 aaKnown RBP9.86□□□□□ -0.83
VPS28-202ENST00000377348 RAB31Q13636 194 aa9.86□□□□□ -0.83
VPS28-202ENST00000377348 OPCMLQ14982 345 aa9.86□□□□□ -0.83
VPS28-202ENST00000377348 Q5BKY6 102 aa9.86□□□□□ -0.83
VPS28-202ENST00000377348 TMEM37Q8WXS4 190 aa9.86□□□□□ -0.83
VPS28-202ENST00000377348 SMIM3Q9BZL3 60 aa9.86□□□□□ -0.83
VPS28-202ENST00000377348 SOCS3O14543 225 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 COX7A2P2O60397 106 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 LYL1P12980 280 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 GALR1P47211 349 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 DEFB1P60022 68 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 PRR20EP86478 221 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 PRR20CP86479 221 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 PRR20DP86480 221 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 PRR20BP86481 221 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 PRR20AP86496 221 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 LINC00305Q7Z4B0 112 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 RSG1Q9BU20 258 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 NPCDR1Q9BY65 106 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms