RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 A0A1W2PRF3 423 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 A0A1W2PRM7 423 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 CXorf1O96002 111 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 STAG3L2P0CL84 134 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 STAG3L3P0CL85 134 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 DEFA4P12838 97 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 MYOD1P15172 320 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 CD33P20138 364 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 GNB1P62873 340 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 KLRD1Q13241 179 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 COX19Q49B96 90 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 C2orf83Q53S99 150 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 OR10J3Q5JRS4 329 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 NUDT10Q8NFP7 164 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 OR10X1Q8NGY0 326 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 OR4A5Q8NH83 315 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 C8orf46Q8TAG6 207 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 HARBI1Q96MB7 349 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 TXN2Q99757 166 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 MRPL18Q9H0U6 180 aaKnown RBP11.41□□□□□ -0.58
HMGA1-203ENST00000374116 IL36BQ9NZH7 164 aa11.41□□□□□ -0.58
HMGA1-203ENST00000374116 SOX21Q9Y651 276 aaPredicted RBP11.41□□□□□ -0.58
HMGA1-203ENST00000374116 TOX4O94842 621 aa11.4□□□□□ -0.58
HMGA1-203ENST00000374116 VMO1Q7Z5L0 202 aa11.4□□□□□ -0.58
HMGA1-203ENST00000374116 PDPNQ86YL7 162 aa11.4□□□□□ -0.58
HMGA1-203ENST00000374116 OR1L8Q8NGR8 309 aa11.4□□□□□ -0.58
HMGA1-203ENST00000374116 FLYWCH2Q96CP2 140 aaKnown RBP11.4□□□□□ -0.58
HMGA1-203ENST00000374116 NSD1Q96L73 2696 aaPredicted RBP11.4□□□□□ -0.58
HMGA1-203ENST00000374116 SIRPDQ9H106 197 aa11.4□□□□□ -0.58
HMGA1-203ENST00000374116 MXRA5Q9NR99 2828 aa11.4□□□□□ -0.59
HMGA1-203ENST00000374116 MT-ND6P03923 174 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 IGHV4-38-2P0DP08 117 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 TSPOP30536 169 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 RHOBP62745 196 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 ETFRF1Q6IPR1 90 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 STPG3Q8N7X2 389 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 OR4C13Q8NGP0 309 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 OR9G1Q8NH87 305 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 VSTM2AQ8TAG5 236 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 SSMEM1Q8WWF3 244 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 SEPSECSQ9HD40 501 aaKnown RBP11.39□□□□□ -0.59
HMGA1-203ENST00000374116 LY96Q9Y6Y9 160 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 C2CD3Q4AC94 2353 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 TRAV40A0A0B4J280 105 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 INS-IGF2F8WCM5 200 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 ARL14EPLP0DKL9 152 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 IGHV1-8P0DP01 117 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 C19orf35Q6ZS72 473 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 BAGE3Q86Y29 109 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 BAGE2Q86Y30 109 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 OR10G8Q8NGN5 311 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 KCNS1Q96KK3 526 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 NABP2Q9BQ15 211 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 GNB1LQ9BYB4 327 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 COMMD5Q9GZQ3 224 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 RNF114Q9Y508 228 aa11.39□□□□□ -0.59
HMGA1-203ENST00000374116 ANK3Q12955 4377 aaKnown RBP11.39□□□□□ -0.59
HMGA1-203ENST00000374116 PRRX1P54821 245 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 LGALS4P56470 323 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 RPL8P62917 257 aaKnown RBP11.38□□□□□ -0.59
HMGA1-203ENST00000374116 PRR20EP86478 221 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 PRR20CP86479 221 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 PRR20DP86480 221 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 PRR20BP86481 221 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 PRR20AP86496 221 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 KLF17Q5JT82 389 aaPredicted RBP11.38□□□□□ -0.59
HMGA1-203ENST00000374116 RUSC1-AS1Q66K80 236 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 BRD3OSQ6XYD6 125 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 OR4C5Q8NGB2 326 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 TMEM167AQ8TBQ9 72 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 NRN1Q9NPD7 142 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 NDUFA4L2Q9NRX3 87 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 WASHC3Q9Y3C0 194 aa11.38□□□□□ -0.59
HMGA1-203ENST00000374116 NIPBLQ6KC79 2804 aaeCLIP11.38□□□□□ -0.59
HMGA1-203ENST00000374116 IGLC7A0M8Q6 106 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 CIDEAO60543 219 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 RNASE2P10153 161 aaKnown RBP11.37□□□□□ -0.59
HMGA1-203ENST00000374116 CBLN1P23435 193 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 GATA3P23771 443 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 COX7A1P24310 79 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 MC5RP33032 325 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 REG1BP48304 166 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 ERHP84090 104 aaKnown RBP11.37□□□□□ -0.59
HMGA1-203ENST00000374116 PMCHL1Q16048 86 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 TBL2Q9Y4P3 447 aaKnown RBP11.37□□□□□ -0.59
HMGA1-203ENST00000374116 HSBP1L1C9JCN9 74 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 MT-CO2P00403 227 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 KRTDAPP60985 99 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 UNQ5815/PRO19632Q6UWF5 114 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 OR4P4Q8NGL7 312 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 TNFRSF14Q92956 283 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 UHRF2Q96PU4 802 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 CSTL1Q9H114 145 aa11.37□□□□□ -0.59
HMGA1-203ENST00000374116 CENPVL3A0A0U1RRI6 287 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 RBP4P02753 201 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 LINC00869P0C866 280 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 HOXB4P17483 251 aaPredicted RBP11.36□□□□□ -0.59
HMGA1-203ENST00000374116 GCHFRP30047 84 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 ATP5G3P48201 142 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 RPL19P84098 196 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms