RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 TMEM170BQ5T4T1 132 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 OR10AG1Q8NH19 301 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 SLC25A39Q9BZJ4 359 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-204ENST00000367248 FRMPD3Q5JV73 1810 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 KIAA1671Q9BY89 1806 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 DEFB113Q30KQ7 82 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 PAM16Q9Y3D7 125 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 NOTCH4Q99466 2003 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 IGHV1-69DA0A0B4J2H0 117 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 IGKV1-6A0A0C4DH72 117 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 IGHV1-69P01742 117 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 CFHR3Q02985 330 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 FER1L6-AS1Q8NA97 138 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 IGFBPL1Q8WX77 278 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 STAG3L2P0CL84 134 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 STAG3L3P0CL85 134 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 LGALS3P17931 250 aaKnown RBP9.42□□□□□ -0.9
SYNE1-204ENST00000367248 CFHR2P36980 270 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 MBD3L1Q8WWY6 194 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 RNF166Q96A37 237 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-204ENST00000367248 PSG8Q9UQ74 426 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 TMEM183AQ8IXX5 376 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 GPR61Q9BZJ8 451 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 FANCMQ8IYD8 2048 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 LEPP41159 167 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 RAB37Q96AX2 223 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 MRAP2Q96G30 205 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 PRELID3AQ96N28 172 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 A0A1B0GW15 77 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 WDR86Q86TI4 376 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 SPRY4Q9C004 299 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 A0A087WX48 190 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 CFAP161Q6P656 301 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 VSIRQ9H7M9 311 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 TRAV12-3A0A0B4J271 114 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 PLCE1Q9P212 2302 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 PLXNA4Q9HCM2 1894 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 TRAV5A0A0B4J249 113 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 G3V318 75 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 IGKV1-16P04430 117 aa9.41□□□□□ -0.9
SYNE1-204ENST00000367248 GBF1Q92538 1859 aa9.4□□□□□ -0.9
SYNE1-204ENST00000367248 OVOL1O14753 267 aa9.4□□□□□ -0.9
SYNE1-204ENST00000367248 FGF16O43320 207 aa9.4□□□□□ -0.9
SYNE1-204ENST00000367248 DKK1O94907 266 aa9.4□□□□□ -0.9
SYNE1-204ENST00000367248 PRDM13Q9H4Q3 707 aa9.4□□□□□ -0.9
SYNE1-204ENST00000367248 CACNG7P62955 275 aa9.4□□□□□ -0.9
SYNE1-204ENST00000367248 A8MXK9 166 aa9.4□□□□□ -0.9
SYNE1-204ENST00000367248 IGKV2-40A0A087WW87 121 aaPredicted RBP9.4□□□□□ -0.91
SYNE1-204ENST00000367248 IGKV2D-40P01614 121 aaPredicted RBP9.4□□□□□ -0.91
SYNE1-204ENST00000367248 RPL23P62829 140 aaKnown RBP9.4□□□□□ -0.91
SYNE1-204ENST00000367248 SMIM12Q96EX1 92 aa9.4□□□□□ -0.91
SYNE1-204ENST00000367248 USMG5Q96IX5 58 aa9.4□□□□□ -0.91
SYNE1-204ENST00000367248 TRGV9Q99603 122 aa9.4□□□□□ -0.91
SYNE1-204ENST00000367248 TRAV21A0A0B4J279 112 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 A0A1W2PNU3 283 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-204ENST00000367248 PMCHL1Q16048 86 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 PEF1Q9UBV8 284 aaKnown RBP9.39□□□□□ -0.91
SYNE1-204ENST00000367248 DEFB131AP59861 70 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 XCL2Q9UBD3 114 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 CNTFRP26992 372 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 PRR31Q5SQ13 230 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 TEX36Q5VZQ5 186 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 Q6ZRM9 215 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 GTF2H5Q6ZYL4 71 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 OR11H1Q8NG94 326 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 A0A0G2JRQ6 117 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 A6NDN8 102 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 ZNF562Q6V9R5 426 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 JKAMPQ9P055 326 aa9.39□□□□□ -0.91
SYNE1-204ENST00000367248 A0A087X0M5 115 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 A0A1B0GX30 115 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 WDR81Q562E7 1941 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 IGHV2-70DA0A0C4DH43 119 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 ATP6V0E1O15342 81 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 CD5P06127 495 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 RCHY1Q96PM5 261 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 TMEM70Q9BUB7 260 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 PMS2P5A8MQ11 134 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 RHPN1-AS1Q9BWJ2 59 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 ZNF98A6NK75 572 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 CMC4P56277 68 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-204ENST00000367248 C9orf139Q6ZV77 190 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 TMEM160Q9NX00 188 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-204ENST00000367248 RNASE2P10153 161 aaKnown RBP9.38□□□□□ -0.91
SYNE1-204ENST00000367248 FOLR2P14207 255 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 SPATA31B1PQ5VZV4 182 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 RPP25LQ8N5L8 163 aaKnown RBP9.38□□□□□ -0.91
SYNE1-204ENST00000367248 TRAV9-1A0A075B6T8 112 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 IGHV4-30-2A0A087WSY4 118 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 E9PQ18 207 aa9.38□□□□□ -0.91
SYNE1-204ENST00000367248 CIRBPQ14011 172 aaKnown RBP9.38□□□□□ -0.91
SYNE1-204ENST00000367248 NPIPB5A8MRT5 1133 aa9.37□□□□□ -0.91
SYNE1-204ENST00000367248 OR4C5Q8NGB2 326 aa9.37□□□□□ -0.91
SYNE1-204ENST00000367248 SCRT1Q9BWW7 348 aa9.37□□□□□ -0.91
SYNE1-204ENST00000367248 CYTL1Q9NRR1 136 aa9.37□□□□□ -0.91
SYNE1-204ENST00000367248 TANC1Q9C0D5 1861 aa9.37□□□□□ -0.91
SYNE1-204ENST00000367248 OR10J3Q5JRS4 329 aa9.37□□□□□ -0.91
SYNE1-204ENST00000367248 A0A0U1RRA0 63 aa9.37□□□□□ -0.91
SYNE1-204ENST00000367248 SRRM4A7MD48 611 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms