RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 GALMQ96C23 342 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 COX14Q96I36 57 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 IFI27L2Q9H2X8 130 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 IGKV1D-8A0A087WSZ0 117 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV3A0A0B4J244 114 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 CYTL1Q9NRR1 136 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 MALP21145 153 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 CEACAM16Q2WEN9 425 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 APOOQ9BUR5 198 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 UBE2E2Q96LR5 201 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 TSPOP30536 169 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 NSUN5P1Q3KNT7 163 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF260Q3ZCT1 412 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 DUX3Q96PT4 197 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 NXT2Q9NPJ8 142 aaKnown RBP2.96□□□□□ -1.94
SYNE1-201ENST00000341594 ANOS1P23352 680 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 DYNLRB2Q8TF09 96 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 BRK1Q8WUW1 75 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 C11orf52Q96A22 123 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 IGHV1-24A0A0C4DH33 117 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF524Q96C55 264 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 C5orf66Q9H5L9 145 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV13-1A0A0B4J241 112 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM155Q4W5P6 130 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 Q6P435 159 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 DNAJB12Q9NXW2 375 aaKnown RBP2.96□□□□□ -1.94
SYNE1-201ENST00000341594 G3V4G9 280 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 IGHV4-34P06331 123 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 TTC9CQ8N5M4 171 aa2.96□□□□□ -1.94
SYNE1-201ENST00000341594 IGHV4-4A0A075B6R2 117 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 NABP2Q9BQ15 211 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 M0R1B8 84 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 SPEM2Q0P670 501 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TIMP1P01033 207 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF324BQ6AW86 544 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 OR13A1Q8NGR1 328 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 SP1P08047 785 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 PDE6HQ13956 83 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ATXN8Q156A1 80 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF292O60281 2723 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ETV2O00321 342 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 OR1L1Q8NH94 360 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 PKIGQ9Y2B9 76 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 PDPNQ86YL7 162 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TSSC4Q9Y5U2 329 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 CKS2P33552 79 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 MRPS11P82912 194 aaKnown RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 RND1Q92730 232 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 AMMECR1Q9Y4X0 333 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 IGHG3P01860 377 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 RBM3P98179 157 aaKnown RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF71Q9NQZ8 489 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 OCIAD1Q9NX40 245 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV12-2A0A075B6T6 113 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 MS4A18H0YCH9 400 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 MGST3O14880 152 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TFF3Q07654 80 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TRGV10A0A0A0MS01 117 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 FGF13Q92913 245 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 MRPL18Q9H0U6 180 aaKnown RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV12-1A0A0B4J245 112 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TTTY13Q9BZ97 58 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 SLC25A53Q5H9E4 307 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF414Q96IQ9 312 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 CXCL13O43927 109 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 PRM2P04554 102 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 PRELID3AQ96N28 172 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 TEX22C9J3V5 150 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ERVK11-1P61568 191 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 WFDC2Q14508 124 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ZADH2Q8N4Q0 377 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 PAQR4Q8N4S7 273 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 FAM240AA0A1B0GVK7 77 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 CFHR3Q02985 330 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 GTSCR1Q86UQ5 136 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 MRPL32Q9BYC8 188 aaKnown RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 SEMA5BQ9P283 1151 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 C1orf159Q96HA4 380 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 PPDPFQ9H3Y8 114 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 IL36RNQ9UBH0 155 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 KNCNA6PVL3 124 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 NAPSAO96009 420 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF324O75467 553 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 LGALS1P09382 135 aaKnown RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 FCGR2BP31994 310 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 KISS1Q15726 138 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ZMAT4Q9H898 229 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 IL36BQ9NZH7 164 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 SLC25A40Q8TBP6 338 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 AICDAQ9GZX7 198 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF658BQ4V348 819 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-201ENST00000341594 MPC1Q9Y5U8 109 aa2.95□□□□□ -1.94
SYNE1-201ENST00000341594 K7EP34 96 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 IL6RP08887 468 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-201ENST00000341594 C18orf12Q96KH6 178 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-201ENST00000341594 H3BRM9 83 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 SYNGR2O43760 224 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 LOXL2Q9Y4K0 774 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms