RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SNHG12Q9BXW3 62 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 WDR83OSQ9Y284 106 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 PMS2P5A8MQ11 134 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 AHRRA9YTQ3 701 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 RNASE4P34096 147 aaKnown RBP7.2□□□□□ -1.26
RTN3-202ENST00000339997 MORN2Q502X0 79 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 EPDR1Q9UM22 224 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 TRAV2A0A0B4J234 112 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 TRGV3P03979 118 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 C20orf204Q6ZNR8 217 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 LURAP1LQ8IV03 231 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 STPG4Q8N801 248 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 C11orf44Q8N8P7 122 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 CYYR1Q96J86 154 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 SFXN3Q9BWM7 321 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 GGTLC1Q9BX51 225 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 IGHV2OR16-5A0A0B4J2B6 119 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.2□□□□□ -1.26
RTN3-202ENST00000339997 MPZP25189 248 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 DUTP33316 252 aaKnown RBP7.2□□□□□ -1.26
RTN3-202ENST00000339997 ZIC4Q8N9L1 334 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 Q8TAT8 98 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 C21orf62Q9NYP8 219 aa7.2□□□□□ -1.26
RTN3-202ENST00000339997 ELOVL5Q9NYP7 299 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 COLQQ9Y215 455 aaPredicted RBP7.19□□□□□ -1.26
RTN3-202ENST00000339997 ANKRD36A6QL64 1941 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 PTPRDP23468 1912 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 LOC105371242A0A075B767 164 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 C9orf106Q8NAJ2 232 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 C19orf24Q9BVV8 132 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 CYSLTR1Q9Y271 337 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 TCRAP04437 139 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 COX5BP10606 129 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 BCL6BQ8N143 479 aaPredicted RBP7.19□□□□□ -1.26
RTN3-202ENST00000339997 ORAOV1Q8WV07 137 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 ZNF479Q96JC4 524 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 LINC00473A8K010 186 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 HOXB1P14653 301 aaPredicted RBP7.19□□□□□ -1.26
RTN3-202ENST00000339997 NTF4P34130 210 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 GLRXP35754 106 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 UCNP55089 124 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 STARD6P59095 220 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 RPL15P61313 204 aaKnown RBP7.19□□□□□ -1.26
RTN3-202ENST00000339997 PSG9Q00887 426 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 BSPH1Q075Z2 132 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 TIMM23BQ5SRD1 257 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 CENPVQ7Z7K6 275 aaPredicted RBP7.19□□□□□ -1.26
RTN3-202ENST00000339997 C1orf162Q8NEQ5 155 aaPredicted RBP7.19□□□□□ -1.26
RTN3-202ENST00000339997 OSR1Q8TAX0 266 aaPredicted RBP7.19□□□□□ -1.26
RTN3-202ENST00000339997 NEUROG1Q92886 237 aa7.19□□□□□ -1.26
RTN3-202ENST00000339997 IGKV2-40A0A087WW87 121 aaPredicted RBP7.18□□□□□ -1.26
RTN3-202ENST00000339997 F8WEM9 126 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 ATP5LO75964 103 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 IGKV2D-40P01614 121 aaPredicted RBP7.18□□□□□ -1.26
RTN3-202ENST00000339997 SNRPD3P62318 126 aaKnown RBP7.18□□□□□ -1.26
RTN3-202ENST00000339997 FAM90A2PQ658T7 463 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 IFI27L1Q96BM0 104 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 IMMP1LQ96LU5 166 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 D6R8Y8 96 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 H3BRM9 83 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 ATP5G2Q06055 141 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 NMSQ5H8A3 153 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 SAMD5Q5TGI4 173 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 FAM166AQ6J272 317 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 GDF15Q99988 308 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 NPFFO15130 113 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 ZNF497Q6ZNH5 498 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 SIGMAR1Q99720 223 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 PSG8Q9UQ74 426 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 RNF115Q9Y4L5 304 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 TNFRSF18Q9Y5U5 241 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 GAGE12BA1L429 117 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 A8MWP6 167 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 MALP21145 153 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 SPSB3Q6PJ21 355 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 MGST2Q99735 147 aa7.18□□□□□ -1.26
RTN3-202ENST00000339997 RPUSD1Q9UJJ7 312 aaKnown RBP7.18□□□□□ -1.26
RTN3-202ENST00000339997 IGHV3-73A0A0B4J1V6 119 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 C15orf61A6NNL5 157 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 UPK2O00526 184 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 TDGF1P3P51864 188 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 CD69Q07108 199 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 C1orf174Q8IYL3 243 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 ZNF524Q96C55 264 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 DUX5Q96PT3 197 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 ANAPC13Q9BS18 74 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 OSTCQ9NRP0 149 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 ANAPC10Q9UM13 185 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 POLR3KQ9Y2Y1 108 aaPredicted RBP7.17□□□□□ -1.26
RTN3-202ENST00000339997 A0A0G2JLM5 398 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 RPS20P60866 119 aaKnown RBP7.17□□□□□ -1.26
RTN3-202ENST00000339997 C16orf54Q6UWD8 224 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 UBE2DNLQ8IWF7 75 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 TMEM105Q8N8V8 129 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 OR5A1Q8NGJ0 315 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 MLNRO43193 412 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 LY6HO94772 140 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 HBDP02042 147 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 PRSS57Q6UWY2 283 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 DPM3Q9P2X0 92 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms